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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1436 fasta sequence
[TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT]
[+] EMBL AK067414 [TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT]
[+] EMBL C28613 [ tagACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACG GACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCNACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCT ]
consensusID : consensus_6420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence
[ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG-GACCCCTCCA-AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA]
[+] EMBL CF312959 [ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG GACCCCTCCA AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGA ]
[-] EMBL CF312960 [ CCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGNGACCCCTCCANAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6420#0 TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGC 60
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 AACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGA 120
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCC 180
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 TGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCA 240
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 TGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGC 300
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 AGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGT 360
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 ACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGG 420
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGC 480
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGG 540
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGT 600
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 TCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACG 660
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGA 720
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 GGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTT 780
consensus_6420#1 ------------------------------------------------------------
consensus_6420#0 CCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 840
consensus_6420#1 --------ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 52
****************************************************
consensus_6420#0 ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 900
consensus_6420#1 ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 112
************************************************************
consensus_6420#0 AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 960
consensus_6420#1 AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 172
************************************************************
consensus_6420#0 TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 1020
consensus_6420#1 TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 232
************************************************************
consensus_6420#0 CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 1080
consensus_6420#1 CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 292
************************************************************
consensus_6420#0 CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 1140
consensus_6420#1 CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 352
************************************************************
consensus_6420#0 ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 1200
consensus_6420#1 ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 412
************************************************************
consensus_6420#0 CCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACC 1260
consensus_6420#1 CCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAG-AGCTTTTTCAGGTCATGT 471
***************** ** * * * ** * ** ** * ** *
consensus_6420#0 GATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAA--CTGGTGATCATCCGGCA 1318
consensus_6420#1 GACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAG-AACTAGTA 530
** * *** * * ** * **** * *** *** * * * *
consensus_6420#0 GCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCA 1378
consensus_6420#1 GAAACGTTATACACAGCTTTTGTGGTGCATAGAGG--AGGAATTCCTTTGTACAATCTCT 588
* ** * * ** * * *** * * * ** * ** *
consensus_6420#0 ATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT 1436
consensus_6420#1 TTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTA--AAAAACTAAAAAAA----- 639
* ** * ** * * ** * * * ** * **** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||