cluster # 6421

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6421 cluster # 6421 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6421#0 length = 898 sequences # 3

consensus_6421#1 length = 772 sequences # 1

consensusID : consensus_6421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 898
fasta sequence

                              [AAAAAACTCGGAGCGATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGGAGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTTAACCAGGTTTCGTTGTGGGACCAC-ATCATACCCGACAAGGACAAAGCGAATTTGCAAGTGGAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTTCAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCTATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAACATGACGATTAAGCA-TTGTGCATCCTAGGCAAAAAAAATAGGAGCTGGGGCAAAATGAAAGCATTTGGCATCTGCCATACGTTAGGATAATTGATGGAAAACCGAAGCAGCATATGAAAAGCACAGAAACAGCGGCTGCGTTTATTCTTGCCCCAGCTCGATTGAGCACATAGAGATGCATTACATGTGCTGGCAGAGTGACTGTCAGTGAAGTACTGACATCAACCAGCTACATCTTCACTCACTGCGTGGTACATATATCTAAGAAACAACGGGCTTATTTGTTGGCATGTTAAAAAAAAAA]

[+] EMBL CF328063             [AAAAAACTCGGAGCGATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGGAGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTTAACCAGGTTTCGTTGTGGGACCAC ATCATACCCGACAAGGACAAAGCGAATTTGCAAGTGGAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTTCAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCTATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAAC                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CF328062             [                                                                                                                                     AAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGGAGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTTAACCAGGTTTCGTTGTGGGACCACTATCATACCCGACAAGGACAAAGCGAATTTGCAAGTGGAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTTCAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCTATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAACATGACGATTAAGCA TTGTGCATCCTAGGCAAAAAAA                                                                                                                                                                                                                                                                           ]
[+] EMBL BI804613             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCTATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAACATGACGATAAAGCACTTGTGCATCCTAGGCAAAATGAATAGGAGCTGGGGCAAAATGAAAGCATTTGGCATCTGCCATACGTTAGGATAATTGATGGAAAACCGAAGCAGCATATGAAAAGCACAGAAACAGCGGCTGCGTTTATTCTTGCCCCAGCTCGATTGAGCACATAGAGATGCATTACATGTGCTGGCAGAGTGACTGTCAGTGAAGTACTGACATCAACCAGCTACATCTTCACTCACTGCGTGGTACATATATCTAAGAAACAACGGGCTTATTTGTTGGCATGTTAAAAAAAAAA]




>consensus_6421#0
AAAAAACTCGGAGCGATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCG
GCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCC
TCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGC
AACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGG
AGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTT
AACCAGGTTTCGTTGTGGGACCACATCATACCCGACAAGGACAAAGCGAATTTGCAAGTG
GAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTT
CAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATG
GCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCTATCTG
ATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAACATGAC
GATTAAGCATTGTGCATCCTAGGCAAAAAAAATAGGAGCTGGGGCAAAATGAAAGCATTT
GGCATCTGCCATACGTTAGGATAATTGATGGAAAACCGAAGCAGCATATGAAAAGCACAG
AAACAGCGGCTGCGTTTATTCTTGCCCCAGCTCGATTGAGCACATAGAGATGCATTACAT
GTGCTGGCAGAGTGACTGTCAGTGAAGTACTGACATCAACCAGCTACATCTTCACTCACT
GCGTGGTACATATATCTAAGAAACAACGGGCTTATTTGTTGGCATGTTAAAAAAAAAA

consensusID : consensus_6421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence

                              [GCACCCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTCTGTGCCTTAAGGCCCTTAACCTTTCGTGCTTGCGTGTGTGTGCTGCCAGAGGCCTAAACGTATTTAGTTTCATTATGCGATAATTTCAAATTATCCAAATCACAGTTTCAGAGTAGTGTCTTCTAAATAGAGCAAGATTTCAATATGTGCTATTCTGTTATAATCTTCTACGCTGTATAATTATGTCATAGTACGTTTTTTTACCTTTTCTCATCAAGTAGCCTGGGTTCTGCCATTGTGTATTTTCGCCTTTTCAGTTTAGATTCAATACATTTCATTATGTGCTATGGAGAGTTTGCTTGGTCTGAAGTTCCGATGTTATGAATTAACAGTCAAAGGCTTGCCTTCGCTTTCTTTTAATGCAAATCTGCTTTGATATCTGTAATCAAGAAATACATTTTAGTAAAAAACCTTTCTTGTGCAAAGGCTTCAAATGTTACTATCTTATACTGAATGCAAAATAGAGTAGACATGTTCCAACTTCCAACCACCTGCAGAACAAAAATCTGTCAACTTCCAATAGCATGATATTCATAAATATACAACAATGATTTTTCCAAAGTAATATTATCTCACTTTCATATCTAGAACAGAGTC]

[+] EMBL CA766680             [GCACCCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTCTGTGCCTTAAGGCCCTTAACCTTTCGTGCTTGCGTGTGTGTGCTGCCAGAGGCCTAAACGTATTTAGTTTCATTATGCGATAATTTCAAATTATCCAAATCACAGTTTCAGAGTAGTGTCTTCTAAATAGAGCAAGATTTCAATATGTGCTATTCTGTTATAATCTTCTACGCTGTATAATTATGTCATAGTACGTTTTTTTACCTTTTCTCATCAAGTAGCCTGGGTTCTGCCATTGTGTATTTTCGCCTTTTCAGTTTAGATTCAATACATTTCATTATGTGCTATGGAGAGTTTGCTTGGTCTGAAGTTCCGATGTTATGAATTAACAGTCAAAGGCTTGCCTTCGCTTTCTTTTAATGCAAATCTGCTTTGATATCTGTAATCAAGAAATACATTTTAGTAAAAAACCTTTCTTGTGCAAAGGCTTCAAATGTTACTATCTTATACTGAATGCAAAATAGAGTAGACATGTTCCAACTTCCAACCACCTGCAGAACAAAAATCTGTCAACTTCCAATAGCATGATATTCATAAATATACAACAATGATTTTTCCAAAGTAATATTATCTCACTTTCATATCTAGAACAGAGTC]




>consensus_6421#1
GCACCCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTCGC
CGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAAGC
CCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTCTGTGC
CTTAAGGCCCTTAACCTTTCGTGCTTGCGTGTGTGTGCTGCCAGAGGCCTAAACGTATTT
AGTTTCATTATGCGATAATTTCAAATTATCCAAATCACAGTTTCAGAGTAGTGTCTTCTA
AATAGAGCAAGATTTCAATATGTGCTATTCTGTTATAATCTTCTACGCTGTATAATTATG
TCATAGTACGTTTTTTTACCTTTTCTCATCAAGTAGCCTGGGTTCTGCCATTGTGTATTT
TCGCCTTTTCAGTTTAGATTCAATACATTTCATTATGTGCTATGGAGAGTTTGCTTGGTC
TGAAGTTCCGATGTTATGAATTAACAGTCAAAGGCTTGCCTTCGCTTTCTTTTAATGCAA
ATCTGCTTTGATATCTGTAATCAAGAAATACATTTTAGTAAAAAACCTTTCTTGTGCAAA
GGCTTCAAATGTTACTATCTTATACTGAATGCAAAATAGAGTAGACATGTTCCAACTTCC
AACCACCTGCAGAACAAAAATCTGTCAACTTCCAATAGCATGATATTCATAAATATACAA
CAATGATTTTTCCAAAGTAATATTATCTCACTTTCATATCTAGAACAGAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6421#0      AAAAAACTCGGAGCGATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCG 60
consensus_6421#1      -----------------GCACCCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCG 43
                                       **** **************************************

consensus_6421#0      GCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCC 120
consensus_6421#1      GCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCC 103
                      ************************************************************

consensus_6421#0      TCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGC 180
consensus_6421#1      TCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGC 163
                      ************************************************************

consensus_6421#0      AACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGG 240
consensus_6421#1      AACGACAAGGT----CTGTGCCTTAA---GGCCCTTAACCTTTCGTGCTTGCGTGTGTGT 216
                      ***********    ***  * * **   * **   **  *   **   *       ** 

consensus_6421#0      AGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTT 300
consensus_6421#1      GCTGCCAG--AGGCCTAAACGTATTTAGTTTCATTATGCGATAATTTCAAA-------TT 267
                          * *   ***  *     * * *   * *    *  ** ** *  **        **

consensus_6421#0      AACCAGGTTTCGTTGTGGGACCACATCATACCCGACAAGGACAAAGCGAATTTGCAAGTG 360
consensus_6421#1      ATCCAAATCACAGTTTCAGAGTA----GTGTCTTCTAA--ATAGAGCAAGATTTCAAT-- 319
                      * ***  *  *  * *  **  *     *  *    **  * * *** *  ** ***   

consensus_6421#0      GAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTT 420
consensus_6421#1      ------ATGTGCTATTCTGTTATAATCTTCTACGCTGTATAATTATGT-----CATAGTA 368
                            * * ** * * *  * * **   * * *        **  *       * *** 

consensus_6421#0      CAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATG 480
consensus_6421#1      CG--TTTTTTTACCTTTTCTCATCAAGT----AGCCTGGGTTCTGCCATTGTGTATTTTC 422
                      *   ** ** ***  *  *   *** *      *** * **  **     *  *    * 

consensus_6421#0      GCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGC-TCTGCTCTATCT 539
consensus_6421#1      GCCTTTTCAGT-TTAGATTCAATACATTTCATTATGTGCTATGGAGAGTTTGCTTGGTCT 481
                      **  * ****  **  *      * * * *  **  *  *  * **  * ****   ***

consensus_6421#0      GATCAGTTC---TGTAGTAGACTCACACATGTAGATCTGG--TAACAATCCTCTAATGAA 594
consensus_6421#1      GA--AGTTCCGATGTTATGAATTAACAGTCAAAGGCTTGCCTTCGCTTTCTTTTAATGCA 539
                      **  *****   ***  *  * * ***     **   **   *  *  ** * ***** *

consensus_6421#0      CATGACGATTAAGCATTGTGCATCCTAGGCAAAAAAAATAGGAGCTGGGGCAAAATGAAA 654
consensus_6421#1      AATC-TGCTTTGATATC-TGTAATCAAGAAATACATTTTAGTAAAAAACCTTTCTTGTGC 597
                       **   * **    **  ** *  * **  * * *   *** *            **   

consensus_6421#0      GCATTTGGCATCTGCCATACGTTAGGATAATTGATGGAAAACCGAAGCAGCATATGAAAA 714
consensus_6421#1      AAAGGCTTCAAATGT--TACTATCTTATACTGAATGCAAAATAGAGTAGACATGTTCCAA 655
                        *     **  **   ***  *   *** *  *** ****  **     *** *   **

consensus_6421#0      GCACAGAAACAGCGGCTGCGTTTATTCTTGCCCCAGCTCGATTGAGCACATAGAGATGCA 774
consensus_6421#1      -CTTCCAACCACCTGCAGAACAAAAATCTGTCAACTTCCAAT--AGCAT---GATATTCA 709
                       *    ** ** * ** *     *    ** *      * **  ****    ** ** **

consensus_6421#0      TTACATGTGCTGGCAGAGTGACTGTCAGTGAAGTACTGACATCAACCAGCTACATCTTCA 834
consensus_6421#1      T-AAATATACA---ACAATGATTTTTC-CAAAGTAATATTATCTCACTTTCATATCTAGA 764
                      * * ** * *    * * *** * *     ***** *   ***   *    * ****  *

consensus_6421#0      CTCACTGCGTGGTACATATATCTAAGAAACAACGGGCTTATTTGTTGGCATGTTAAAAAA 894
consensus_6421#1      ---ACAGAGTC------------------------------------------------- 772
                         ** * **                                                  

consensus_6421#0      AAAA 898
consensus_6421#1      ----