cluster # 6422

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Oryza sativa
cluster # 6422 cluster # 6422 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6422#0 length = 697 sequences # 3

consensus_6422#1 length = 692 sequences # 1

consensusID : consensus_6422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 697
fasta sequence

                              [TTAGATTTTGCCTGCATCCTGAAAGCTGCTCCTTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGAAGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT-GATATTGTCAATTATGCAAATTAAAT-GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT-AATAACGTTTCT-GGATATATATTTTTATGAGTGAATTTCA-TTTTGGGCGTTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGGNCGCC]

[+] EMBL CB096770             [TTAGATTTTGCCTGCATCCTGAAAGCTGCTCCTTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGAAGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGGATATTGTCAATTATGCAAATTAAATGGGAGAAGTGAGAGGATGTTGCAAAATTGGAGATATCTTTATAGCTAAACTACTGTAAATAACGGTTCT GGATATATATTTTTATGAGTGAATTTCATTTTTGGGCGNTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGGNCGCC]
[-] EMBL CF328092             [                                                                                                                              GCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT GATATTGTCAATTATGCAAATTAAAT GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT AATAACGTTTCT GGATATATATTTTTATGAGTGAATTTCA TTTTGGGCGTTTAAAAAAAAAAAAAA                    ]
[+] EMBL AU163066             [                                                                                                                                                                                                                                                                                                                                                CTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATNAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTT GATATTGTCAATTATGCAAATTAAAT GGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGT AATAACGTTTCTGGGATATATATTTTTATGAGTGAATTTCA TTTTGGGCGTTTAAA                               ]




>consensus_6422#0
TTAGATTTTGCCTGCATCCTGAAAGCTGCTCCTTTGCTTGAAATACTGGAATTGCATATG
TGGATGCCCTATGATAACCAACATTACTGTGAAGATCATGGTGTTCTTCGAAGTCTCCCC
AATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGAT
CAGTTGGAGCTTTTACGCCATATCCTAATAAATTCTGTCATGCTCAATGCAATGAAGATA
GATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTT
AATTGTTTGAATGGATATAGAGTTGCCATGGAATATCTTAGCAAAGCAGACCACCGCAAT
GTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATT
ATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCAT
CTGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGTCA
ATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGC
TAAACTACTGTAATAACGTTTCTGGATATATATTTTTATGAGTGAATTTCATTTTGGGCG
TTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGGNCGCC

consensusID : consensus_6422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCCTTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGAAGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAACTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATATTTTTTTGAGTGAATTTCCAAAAAAAAAAAAA]

[-] EMBL CA760152             [TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCCTTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGAAGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTATGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAACTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGGAACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGAATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGATGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGCTATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTTGCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGATGTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATATTTTTTTGAGTGAATTTCCAAAAAAAAAAAAA]




>consensus_6422#1
TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCC
TTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGA
AGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTA
TGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAA
CTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGG
AACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGA
ATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGA
TGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGC
TATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTT
GCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGAT
GTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATA
TTTTTTTGAGTGAATTTCCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6422#0      ----------------------------TTAGATTTTGCCTGCATCCTGAAAGCTGCTCC 32
consensus_6422#1      TAGGACCAGCCAAGGGGAGGCTGATATGTTGAGTTTGGCGTGCATCCTGAAAGTTGGTCC 60
                                                  **   *** ** ************* ** ***

consensus_6422#0      TTTGCTTGAAATACTGGAATTGCATATGTGGATGCCCTATGATAACCAACATTACTGTGA 92
consensus_6422#1      TTTGCTTGAAATCCGGGAATTGCATATGTGGATGCCCTCTGATACCCAACCCTGCTGTGA 120
                      ************ * *********************** ***** *****  * ******

consensus_6422#0      AGATCATGGTGTTCTTCGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTA 152
consensus_6422#1      AGATCATGGTGTTCTTTGAAGTCTCCCCAATCACGCTCACTCCAATCTCAAGCTCGCCTA 180
                      **************** *******************************************

consensus_6422#0      TGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAA 212
consensus_6422#1      TGTTACTGGATTTTACGGCATGAAAGATCAGTTGGAGCTTTTACGCCATATCCTAATAAA 240
                      ************************************************************

consensus_6422#0      TTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGG 272
consensus_6422#1      CTCTGTCATGCTCAATGCAATGAAGATAGATCCAAGGCCGGTTGTCGCTGTTCCCCATGG 300
                       ***********************************************************

consensus_6422#0      AACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGA 332
consensus_6422#1      AACGGTGATGTTATGTACTGAAGGGCTTAATTGTTTGAATGGATATAGAGTTGCCATGGA 360
                      ************************************************************

consensus_6422#0      ATATCTTAGCAAAGCAGACCACCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGA 392
consensus_6422#1      ATATTTTAGCAAAGCAGACCCCCGCAATGTTCTTGATGTTCATGAAATCCTGCTTGAGGA 420
                      **** *************** ***************************************

consensus_6422#0      TGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGC 452
consensus_6422#1      TGTTCAAAAGCGTGAAATTTATGCGATTATGAAGGATCGTTGGATTCAAGAGCCGAAAGC 480
                      ************************************************************

consensus_6422#0      TATGCTAAGCTATTTCTGATCATATCATCTGCAACCCTTTTCAAGAACACAGTCAAGCTT 512
consensus_6422#1      TATGCTAAGCTATTTCTGATCATATCATCCGCAACCCTTTTCAAGAACACAGTCAAGCTT 540
                      ***************************** ******************************

consensus_6422#0      GCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGAT 572
consensus_6422#1      GCTTGGGAGAAACTAGTTGATATTGTCAATTATGCAAATTAAATGGAGAAGTGAGAGGAT 600
                      ************************************************************

consensus_6422#0      GTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATA 632
consensus_6422#1      GTTGTAAAATTGGAGATATCTTTATAGCTAAACTACTGTAATAACGTTTCTGGATATATA 660
                      ************************************************************

consensus_6422#0      TTTTTATGAGTGAATTTCATTTTGGGCGTTTAAAAAAAAAAAAAAAAAAAAAAAAAGCGG 692
consensus_6422#1      TTTTTTTGAGTGAATTTC------------CAAAAAAAAAAAAA---------------- 692
                      ***** ************             *************                

consensus_6422#0      NCGCC 697
consensus_6422#1      -----