These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1302 fasta sequence [GGCCAAGTGACGAGCAAAACCCACCC-AAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCG-AGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT] [+] EMBL AK067368 [GGCCAAGTGACGAGCAAAACCCACCC AAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCG AGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT] [+] EMBL C73330 [ AAAACCCACCCAAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCNGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGCCGAAGTGGCCCCGACGGCCATCCAGCTTGNAAGCATTATNAGGCCTCGAAACCTACCTTCCACATCCACGCNATTNTTCTCCGGCTCCTCCTCCTCCTTCTCCTCCTCGGATCCNTCGAAATGGCGGCG CGCCTCAGCCCGTGCCGGCGGCCGGGGCNGCcaccg ] consensusID : consensus_6437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1191 fasta sequence [CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGAGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGG-AGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAG] [+] EMBL AK070184 [CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGAGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGG AGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAG] [-] EMBL C27158 [ TGGCTGATGGTGGAAGTTGCTGCTGGTCTTCCNCGGGAACTTGCACCTGGTCTTGCATCTCAGACAG TCCTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6437#0 -GGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCG 59 consensus_6437#1 CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCG 60 *********************************************************** consensus_6437#0 GCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGA 119 consensus_6437#1 GCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGA 120 ************************************************************ consensus_6437#0 GTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACA 179 consensus_6437#1 GTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACA 180 ************************************************************ consensus_6437#0 TCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGG 239 consensus_6437#1 TCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGG-------------- 226 ********************************************** consensus_6437#0 CGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCG 299 consensus_6437#1 ------------------------------------------------------------ consensus_6437#0 GGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCG 359 consensus_6437#1 -GTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCG 285 ************************************ ********************** consensus_6437#0 TCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCT 419 consensus_6437#1 TCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCT 345 ************************************************************ consensus_6437#0 TCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACG 479 consensus_6437#1 TCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACG 405 ************************************************************ consensus_6437#0 TGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCT 539 consensus_6437#1 TGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCT 465 ************************************************************ consensus_6437#0 TGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGC 599 consensus_6437#1 TGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGC 525 ************************************************************ consensus_6437#0 AGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTG 659 consensus_6437#1 AGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTG 585 ************************************************ *********** consensus_6437#0 GACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTG 719 consensus_6437#1 GACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTG 645 ************************************************************ consensus_6437#0 TAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATG 779 consensus_6437#1 TAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATG 705 ************************************************************ consensus_6437#0 CTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGG 839 consensus_6437#1 CTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGG 765 ************************************************************ consensus_6437#0 CTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGA 899 consensus_6437#1 CTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGA 825 ************************************************************ consensus_6437#0 CAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGG 959 consensus_6437#1 CAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGG 885 ************************************************************ consensus_6437#0 ATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTG 1019 consensus_6437#1 ATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTG 945 ************************************************************ consensus_6437#0 CATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTT 1079 consensus_6437#1 CATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTT 1005 ************************************************************ consensus_6437#0 CTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATT 1139 consensus_6437#1 CTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATT 1065 ************************************************************ consensus_6437#0 TCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAA 1199 consensus_6437#1 TCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAA 1125 ************************************************************ consensus_6437#0 TTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGA 1259 consensus_6437#1 TTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGA 1185 ************************************************************ consensus_6437#0 TGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT 1302 consensus_6437#1 TGTTAG------------------------------------- 1191 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||