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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1054 fasta sequence
[AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC]
[+] EMBL AU068093 [AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAA ]
[+] EMBL AK061608 [ TTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAGTGTCAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC]
consensusID : consensus_6439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA]
[-] EMBL CF328928 [TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA]
consensusID : consensus_6439#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA]
[+] EMBL AU077420 [AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6439#0 --------AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNC 52
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTC 60
consensus_6439#0 TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 112
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 120
consensus_6439#0 ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 172
consensus_6439#2 ----------------------------AGTGGATTCATGTGCGGTCTTACGACAATGCA 32
consensus_6439#1 ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 180
********************************
consensus_6439#0 TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 232
consensus_6439#2 TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 92
consensus_6439#1 TCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 240
**************************** *******************************
consensus_6439#0 GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 292
consensus_6439#2 GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 152
consensus_6439#1 GCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGT 300
***************************** ******************************
consensus_6439#0 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 352
consensus_6439#2 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 212
consensus_6439#1 CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAA 360
****************************************************** * * *
consensus_6439#0 CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 412
consensus_6439#2 CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 272
consensus_6439#1 ACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACA 420
*************************************** * **************
consensus_6439#0 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 472
consensus_6439#2 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 332
consensus_6439#1 GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 480
************************************************************
consensus_6439#0 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 532
consensus_6439#2 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 392
consensus_6439#1 TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAA 540
*************************************************** ****
consensus_6439#0 TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGC 592
consensus_6439#2 TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA-------- 444
consensus_6439#1 AAAAAA---------AAAAAAAAAAAAAATGTCATGCCGTTA------------------ 573
* * * ** * *** ** ***
consensus_6439#0 TTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGT 652
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 TTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAA 712
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 GAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGT 772
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 TTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCA 832
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 TCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGT 892
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 CATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTA 952
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 CTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTA 1012
consensus_6439#2 ------------------------------------------------------------
consensus_6439#1 ------------------------------------------------------------
consensus_6439#0 TTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC 1054
consensus_6439#2 ------------------------------------------
consensus_6439#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||