cluster # 6441

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Oryza sativa
cluster # 6441 cluster # 6441 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6441#0 length = 530 sequences # 1

consensus_6441#1 length = 450 sequences # 2
consensus_6441#2 length = 387 sequences # 1

consensusID : consensus_6441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [ACGCCCTCCATCCACCATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCGCGGCGTGCTCCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGGCGACCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGCAGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGGTGGAGGAGCTGGAGAAGGCCGACGTGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAAGAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTTGATGTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTTTTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC]

[+] EMBL CA764199             [ACGCCCTCCATCCACCATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCGCGGCGTGCTCCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGGCGACCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGCAGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGGTGGAGGAGCTGGAGAAGGCCGACGTGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAAGAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTTGATGTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTTTTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC]




>consensus_6441#0
ACGCCCTCCATCCACCATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGC
GCGGCGTGCTCCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTC
CATCGGCGACCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTC
CGCGACTGCAGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATC
CGACAACGGTGGAGGAGCTGGAGAAGGCCGACGTGGAGGGCGAGGTGACGGCTAGTGATG
CGAAAGAAGAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGT
TCTTGATGTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTT
CTTGTTGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGC
ATTCTTTTTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC

consensusID : consensus_6441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 450
fasta sequence

                              [CCCTACATCTGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGTGACGGCTAGCGACGGGAAGGAAGAGGCTCCTTTTAGATCATGATGTTCTTGATGTATTACTGAAATTCTTCGATGTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA]

[+] EMBL BI800018             [CCCTACATCTGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGT                                                                                                                                                                                                  ]
[+] EMBL AU172702             [      ATCTG CCAGAT  CA GGAAGGAGAA  CAGA CTGCCC GGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCA TGGTGGGTGAGGTGACGGCTAGCGACGGGAAGGAAGAGGCTCCTTTTAGATCATGATGTTCTTGATGTATTACTGAAATTCTTCGATGTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATGTGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA]




>consensus_6441#1
CCCTACATCTGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGT
CGGCGCGCTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCC
ATCGGGCGACCGCGACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAG
GCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAG
CACTGGTGGGCGAGGTGACGGCTAGCGACGGGAAGGAAGAGGCTCCTTTTAGATCATGAT
GTTCTTGATGTATTACTGAAATTCTTCGATGTGTTCTTGATATGCTCAGGTCGGCTTGAT
TTGTGCTCTGTGTTTGCGATGTTCTTGATGTGTTCTTGAAGTTCTTGATGTGCTCGGGTC
GGTTTGATTCGAGCAAAGCCGGCAAAAAAA

consensusID : consensus_6441#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTAGCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATCTGCCAGATCAGGAAGGAGAACAGACTGCCGGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCNACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCATNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAAGAGGNTCT]

[+] EMBL OSC420               [TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTAGCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATCTGCCAGATCAGGAAGGAGAACAGACTGCCGGAGCGGATGCGCCGGCGCACTCTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCNACGTCAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCATNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAAGAGGNTCT]




>consensus_6441#2
TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTA
GCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATC
TGCCAGATCAGGAAGGAGAACAGACTGCCGGAGCGGATGCGCCGGCGCACTCTCCCTTCC
ACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGACCGCNACGT
CAGCGGCTTCCTGCGGCAACAGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCC
TCCTCTCCATCCGACGATGATGGTGGAGCTGGAGAAGGCCAGCATNGTGGGTGAGGTNAC
GGCTAGCGACGGGAAGGAAGAGGNTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6441#0      ------------------------------------------------------------
consensus_6441#1      ------------------------------------------------------------
consensus_6441#2      TCCACCACTCTCTCCCTCTCTNAATGGCCTGGTGAAGGTGGAGGCGGCGGGGGCCTGGTA 60
                                                                                  

consensus_6441#0      ------------------------------------------------ACGCCCTCCATC 12
consensus_6441#1      ---------------------------------------------------CCCTACATC 9
consensus_6441#2      GCAGCGCTCTCCCCTCCGTNAGATCCGGCAGGAGGGGAGGTGGCAACGGCGCCCTACATC 120
                                                                         **** ****

consensus_6441#0      CACC-ATATCAGGAGGGAGAACAGGCCGCAGGAGCGGAGGCGGCGGCGCG-CGGCGTGCT 70
consensus_6441#1      TGCCCAGATTCCACGGAAGGAGAACCCAGACCTGCCCACGAGCGGATGCGTCGGCGCGCT 69
consensus_6441#2      TGCC-AGATCAGGAAGGAGAACAGACTGCCGGAGCGGA--------TGCGCCGGCGCACT 171
                        ** * **      * ** * *  *       **  *         *** *****  **

consensus_6441#0      CCCCCTTCCGCTCTGTACGGCGGGAAGGAAGGCTCGCACCTCCTCCTCTCCATCGG-CGA 129
consensus_6441#1      CTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGA 129
consensus_6441#2      CTCCCTTCCACTCCATCCAGCGGGAAGGAAGGCTCGTGCCTCCTCCTCTCCATCGGGCGA 231
                      * ******* ***  * * *****************  ****************** ***

consensus_6441#0      CCACGACGTCGGCGGCTTCCCATGGAGGATCCTCAGGCGACGGCGGCTTTCCGCGACTGC 189
consensus_6441#1      CCGCGACGTCAGCGGCTTCCT-------------------------------GCGGCAAC 158
consensus_6441#2      CCGCNACGTCAGCGGCTTCCT-------------------------------GCGGCAAC 260
                      ** * ***** *********                                *** *  *

consensus_6441#0      AGTGGTGGTGGTGGTGCAGAAGGCGGCGGCGCCGTCCTCCTCCTCTCCATCCGACAACGG 249
consensus_6441#1      AGCGGCGGTGGTGGTGCAGAAGGCAGCGGCGCCGTCCTCCTCCTCTCCATCCGACGATGA 218
consensus_6441#2      AGCGGCGGTGGTGGTGCAGAAGGCGGCGGCGCGTCCCTCCTCCTCTCCATCCGACGATGA 320
                      ** ** ****************** *******   ******************** * * 

consensus_6441#0      TGGAGGAGCTGGAGAAGGCCGACG-TGGAGGGCGAGGTGACGGCTAGTGATGCGAAAGAA 308
consensus_6441#1      TGGTGGAGCTGGAGAAGGCCAGCACTGGTGGGCGAGGTGACGGCTAGCGACGGGAAGGAA 278
consensus_6441#2      TGGTGGAGCTGGAGAAGGCCAGCA-TNGTGGGTGAGGTNACGGCTAGCGACGGGAAGGAA 379
                      *** ****************  *  * * *** ***** ******** ** * *** ***

consensus_6441#0      GAGGCTTCTTTTCGATCATGATGTTAATGTGTTCATGATGTATTACTGAAGTTCTT-GAT 367
consensus_6441#1      GAGGCTCCTTTTAGATCATGATG--------TTCTTGATGTATTACTGAAATTCTTCGAT 330
consensus_6441#2      GAGGNTCT---------------------------------------------------- 387
                      **** *                                                      

consensus_6441#0      GTGTTCTTGATGTTCTCGGGTCAGCTTGATTCGTGCTTTGTGTTCATGATGTTCTTGTTG 427
consensus_6441#1      GTGTTCTTGATATGCTCAGGTCGGCTTGATTTGTGCTCTGTGTTTGCGATGTTCTTGATG 390
consensus_6441#2      ------------------------------------------------------------
                                                                                  

consensus_6441#0      TGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGCATGATTCGAGGAAAGCTAGCATTCTTT 487
consensus_6441#1      TGTTCTTGAAGTTCTTGATGTGCTCGGGTCGGTTTGATTCGAGCAAAGCCGGCAAAAAAA 450
consensus_6441#2      ------------------------------------------------------------
                                                                                  

consensus_6441#0      TTGGCTCGTTCATCATTATAGGTGTTGGTTCTAAAACGACACC 530
consensus_6441#1      -------------------------------------------
consensus_6441#2      -------------------------------------------