cluster # 6447

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Oryza sativa
cluster # 6447 cluster # 6447 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6447#0 length = 761 sequences # 3

consensus_6447#1 length = 422 sequences # 1

consensusID : consensus_6447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 761
fasta sequence

                              [AGTTTAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATCCGCTGCTGTTTATTATCTTTTTTCTATAGATTTCTTAATTAATCAACGAATTGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGGNAAGCAG-AAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAA-GAAGCACAGAAGCTGATGAAGATGCCATTCCAGCGCGCAATTACCA-AAAAAGAGCAGGCTGATATGGGCAAGCTG-A-AGAAAAGTGTTCGCGGACTGGTCGTTGTG-CACCCAATGACCGCACTGGG-CCGCGAAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAG-AACACAGTATTCTACAGGGTGGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGGCATCCGGCAAGANAAGGCGCTCTGGGATCAACAACCTAAGGGGCAATTCTCTGATGGANGGTTGCCCTTTTCTTTACCAGACATCTNCCCCCAAAAGG]

[+] EMBL AU069949             [AGTTTAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATCCGCTGCTGTTTATTATCTTTTTTCTATAGATTTCTTAATTAATCAACGAATTGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGGNAAGCAGNAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAA GAAGCACAGAAGCTGATGAAGATGCCATTCCAGCGCGCAATTACCA AAAAAGAGCAGGCTGATATGGGCAAGCTG A AGAAAAGTGTTCGCGGACTGGTCGTTGTG CACCCAATGACCGCACTGGG CCGCGAAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAG AACACAGTATTCTACAGGGTGGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGCCGGCATCCGGCAAGANAAGGCGCTCTGGGATCAACAACCTAAGGGGCAATTCTCTGATGGANGGTTGCCCTTTTCTTTACCAGACATCTNCCCCCAAAAGG]
[+] EMBL AU069955             [ GTTTAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATCCGCTGCTGTTTATTATCTTTTTTCTATAGATTTCTTAATTAATCAACGAATTGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGGNAAGCAG AAATTGCTCGCCTGCGTGGAGTTCATAGCCAAAAACTGAGTAAA GAAGCACAGAAGCTGATGAAGATGCCATTCCAGCGCGCAATTACCA AAAAAGAGCAGGCTGATATGGGCAAGCTGAA AGAAAAGTGTTCGCGGACNGGTCGTTGTGACACCCAATGAACGCACTGGGNCCGCGAAATGGGCCTGCANGAGATGACTGGGGTTTCAAAGACCGNGTTTTAAGAAACACAGTA TCTAAAGGGTGat                                                                                                                                           ]
[-] EMBL BI805946             [    TAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATCCGCTGCTGTTTATTATCTTTTTTCTATAGATTTCTTAATTAATCAACGAATTGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGG AAGCAG AAA TGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAACGAAGCACAGAAGCTGATGANGATGCCATTCCAGCGCGCAATTACCACAACAAGAGCAGGCTGATATGGGCAAGCTG ACAGAAAAGTGTTCGCGGACTGGTCGTTGTG CACCCAATGACCGCACTGGG CCG GGAATGGGCC                                                                                                                                                                                                          ]




>consensus_6447#0
AGTTTAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATC
CGCTGCTGTTTATTATCTTTTTTCTATAGATTTCTTAATTAATCAACGAATTGCGCAGTT
TTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAG
CACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAA
GAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAG
CAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAA
GCCACGCTGGNAAGCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAA
AGAAGCACAGAAGCTGATGAAGATGCCATTCCAGCGCGCAATTACCAAAAAAGAGCAGGC
TGATATGGGCAAGCTGAAGAAAAGTGTTCGCGGACTGGTCGTTGTGCACCCAATGACCGC
ACTGGGCCGCGAAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTAAGA
ACACAGTATTCTACAGGGTGGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCACGC
CGGCATCCGGCAAGANAAGGCGCTCTGGGATCAACAACCTAAGGGGCAATTCTCTGATGG
ANGGTTGCCCTTTTCTTTACCAGACATCTNCCCCCAAAAGG

consensusID : consensus_6447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [NTNTTTNTTTTTNNTNTTNNTTTTNNNNNNNCNTNCTGNNTNNTNANTAATNATNCGNTGCTTGTTTATTATCTTTNTTCTATAGATTTTCTTAATTAATCAACGAATTNGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGGAAGCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAAGAAG]

[-] EMBL AU182684             [NTNTTTNTTTTTNNTNTTNNTTTTNNNNNNNCNTNCTGNNTNNTNANTAATNATNCGNTGCTTGTTTATTATCTTTNTTCTATAGATTTTCTTAATTAATCAACGAATTNGCGCAGTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGCCACGCTGGAAGCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAAGAAG]




>consensus_6447#1
NTNTTTNTTTTTNNTNTTNNTTTTNNNNNNNCNTNCTGNNTNNTNANTAATNATNCGNTG
CTTGTTTATTATCTTTNTTCTATAGATTTTCTTAATTAATCAACGAATTNGCGCAGTTTT
TGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACAAAGCA
CCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATGAAAGA
AGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCACCAGCA
GGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAGAAAGC
CACGCTGGAAGCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAGTAAAGA
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6447#0      AGTTTAGGTTCCCGGTAAAGATGACATTAAGGAAAACGTGCTGAATCCTCAATAATCATC 60
consensus_6447#1      -----NTNTTTNTTTTTNNTNTTNNTTTTNNNNNNNCNTNCTGNNTNNTNANTAATNATN 55
                              **     *     *    **        * * ***  *  * * **** ** 

consensus_6447#0      CGCTGCT-GTTTATTATCTTTTTTCTATAGATTT-CTTAATTAATCAACGAATTG-CGCA 117
consensus_6447#1      CGNTGCTTGTTTATTATCTTTNTTCTATAGATTTTCTTAATTAATCAACGAATTNGCGCA 115
                      ** **** ************* ************ *******************  ****

consensus_6447#0      GTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACA 177
consensus_6447#1      GTTTTTGAGCATGTTAATGATTACGTTACAGAACTATTACAATGTCATTAGTTGTGAACA 175
                      ************************************************************

consensus_6447#0      AAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATG 237
consensus_6447#1      AAGCACCTGGTCGCGCATACTAGGGGCTATAAATTTATCTTTATCAGAAGCCATCACATG 235
                      ************************************************************

consensus_6447#0      AAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCAC 297
consensus_6447#1      AAAGAAGTCGAAAAAAACGAAATCAAACGCCTCAGCGATCGCCTGGACGCCATCCGCCAC 295
                      ************************************************************

consensus_6447#0      CAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAG 357
consensus_6447#1      CAGCAGGCCGATCTTTCGCTGGTTGAAGCCGCAGACAAATATGCCGAGCTGGAAAAAGAG 355
                      ************************************************************

consensus_6447#0      AAAGCCACGCTGGNAAGCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAG 417
consensus_6447#1      AAAGCCACGCTGGAA-GCAGAAATTGCTCGCCTGCGTGAAGTTCATAGCCAAAAACTGAG 414
                      ************* * ********************************************

consensus_6447#0      TAAAGAAGCACAGAAGCTGATGAAGATGCCATTCCAGCGCGCAATTACCAAAAAAGAGCA 477
consensus_6447#1      TAAAGAAG---------------------------------------------------- 422
                      ********                                                    

consensus_6447#0      GGCTGATATGGGCAAGCTGAAGAAAAGTGTTCGCGGACTGGTCGTTGTGCACCCAATGAC 537
consensus_6447#1      ------------------------------------------------------------
                                                                                  

consensus_6447#0      CGCACTGGGCCGCGAAATGGGCCTGCAGGAGATGACTGGGTTTTCAAAGACCGCGTTTTA 597
consensus_6447#1      ------------------------------------------------------------
                                                                                  

consensus_6447#0      AGAACACAGTATTCTACAGGGTGGATTCTGCACATTCCTATAGGCCGAGTAAGGTGTTCA 657
consensus_6447#1      ------------------------------------------------------------
                                                                                  

consensus_6447#0      CGCCGGCATCCGGCAAGANAAGGCGCTCTGGGATCAACAACCTAAGGGGCAATTCTCTGA 717
consensus_6447#1      ------------------------------------------------------------
                                                                                  

consensus_6447#0      TGGANGGTTGCCCTTTTCTTTACCAGACATCTNCCCCCAAAAGG 761
consensus_6447#1      --------------------------------------------