cluster # 6452

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Oryza sativa
cluster # 6452 cluster # 6452 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6452#0 length = 606 sequences # 3

consensus_6452#1 length = 421 sequences # 1

consensusID : consensus_6452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 606
fasta sequence

                              [ACACCCTCCATATCCTCTCTGTCTCTATACCACCGCCACCCGCAGCCCCTCCTACTCCCCTCTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTGCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAGACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCATGAGCGGATCCGG-CGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTCTCGCACATGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAGCGATGGCGGCAGGCGGAGTTCTCGTCTGCAGGGATGTTGTTGTTAGATGGATTGATGGGTGATTTGTGTTTTGTGATTTGGAGGATGTTGTTGGATAAATCGATGGTGGTATGGGGGTGATAGGGAGCAACTTAATTTAAGCCGATGCATCGAGCCAGCGTTTTTTTTTTCCGCATTCGTGGAACCTCAAAGGTGCTAGTTTCTAAACTG]

[+] EMBL AK063219             [ACACCCTCCATATCCTCTCTGTCTCTATACCACCGCCACCCGCAGCCCCTCCTACTCCCCTCTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTGCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAGACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCATGAGCGGATCCGG CGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTCTCGCACATGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAGCGATGGCGGCAGGCGGAGTTCTCGTCTGCAGGGATGTTGTTGTTAGATGGATTGATGGGTGATTTGTGTTTTGTGATTTGGAGGATGTTGTTGGATAAATCGATGGTGGTATGGGGGTGATAGGGAGCAACTTAATTTAAGCCGATGCATCGAGCCAGCGTTTTTTTTTTCCGCATTCGTGGAACCTCAAAGGTGCTAGTTTCTAAACTG]
[+] EMBL CF329915             [        CATATCCTCTCTGTCTCTATACCACCGCCACCCGCAGCCCCTCCTACTCCCCTCTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTGCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAGACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCATGAGCGGATCC                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF315370             [                 TCTGTCTCTATACCACCGCCAACCGCAACCCCTCCTACTACCCTTTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTGCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCAGATACTGTGCAAATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACCATGGCTCCCGTGGCCGGATCCATTGGATCAGATGACGACTACCATGGGCTCCCATGATCGGATCCGGACGATGTCTCCCGCAGATGGATCCAGAGGCGCCAATGGCTCTCGCACATGGAGGCAGCAATGGCAACCTCcg                                                                                                                                                                                                                              ]




>consensus_6452#0
ACACCCTCCATATCCTCTCTGTCTCTATACCACCGCCACCCGCAGCCCCTCCTACTCCCC
TCTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTG
CTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAG
ACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCA
ACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCA
TGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTCTCGCACA
TGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAGCGATGGCGGCAGGCGGAGTTCTCG
TCTGCAGGGATGTTGTTGTTAGATGGATTGATGGGTGATTTGTGTTTTGTGATTTGGAGG
ATGTTGTTGGATAAATCGATGGTGGTATGGGGGTGATAGGGAGCAACTTAATTTAAGCCG
ATGCATCGAGCCAGCGTTTTTTTTTTCCGCATTCGTGGAACCTCAAAGGTGCTAGTTTCT
AAACTG

consensusID : consensus_6452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [GCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAGACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCATGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTTTCGCACATGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAAAAATGGCGGCAGGCGGAGTTCTCGTTTGCAGTGAGTGACTGCACCTCCTTTGATTTGGTTTTTGATGAATGCTTGATTCTATAATGTGCAATTGTTGATGGATATCCGGTTGAAATTTTTGTGATTTGTGCTAAAAAAAAAAAA]

[-] EMBL CF329916             [GCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAGACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCAACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCATGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTTTCGCACATGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAAAAATGGCGGCAGGCGGAGTTCTCGTTTGCAGTGAGTGACTGCACCTCCTTTGATTTGGTTTTTGATGAATGCTTGATTCTATAATGTGCAATTGTTGATGGATATCCGGTTGAAATTTTTGTGATTTGTGCTAAAAAAAAAAAA]




>consensus_6452#1
GCTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGA
GACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGC
AACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCC
ATGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTTTCGCAC
ATGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAAAAATGGCGGCAGGCGGAGTTCTC
GTTTGCAGTGAGTGACTGCACCTCCTTTGATTTGGTTTTTGATGAATGCTTGATTCTATA
ATGTGCAATTGTTGATGGATATCCGGTTGAAATTTTTGTGATTTGTGCTAAAAAAAAAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6452#0      ACACCCTCCATATCCTCTCTGTCTCTATACCACCGCCACCCGCAGCCCCTCCTACTCCCC 60
consensus_6452#1      ------------------------------------------------------------
                                                                                  

consensus_6452#0      TCTCCACCGCTGCGGCATCGTGGCATCCTCCCCCTCAACGGTGGTGACTCCGGCGGGCTG 120
consensus_6452#1      -----------------------------------------------------------G 1
                                                                                 *

consensus_6452#0      CTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAG 180
consensus_6452#1      CTCTGCTAGCTGGGACAACGATGGCTCCCATGGGCAGATCTGTCGGTGGCGACGGCGGAG 61
                      ************************************************************

consensus_6452#0      ACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCA 240
consensus_6452#1      ACTGTGCAGATCCATAGGCTGCGGCGGCGGTGGCTCCCGCGCTCGGATTTGTCAGTTGCA 121
                      ************************************************************

consensus_6452#0      ACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCA 300
consensus_6452#1      ACGACGATGGCTCCCGTGGCCGGATCCATTGGTTCAGATGACGACAAGCATGGGCTCCCA 181
                      ************************************************************

consensus_6452#0      TGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTCTCGCACA 360
consensus_6452#1      TGAGCGGATCCGGCGATGTCTCCCGCAGATGGATCCAGTGGCGTCGATGGCTTTCGCACA 241
                      **************************************************** *******

consensus_6452#0      TGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAGCGATGGCGGCAGGCGGAGTTCTCG 420
consensus_6452#1      TGGAGGCAGCAATGGCAACCTCGGCGCCCCAATGAAAAATGGCGGCAGGCGGAGTTCTCG 301
                      ***********************************   **********************

consensus_6452#0      TCTGCAGGGATGTTGTTGTTAGATGGATTGATGGGTGATTTGTGTTTTGTGATTTGGAGG 480
consensus_6452#1      TTTGCAGTGA-GTGACTGC-ACCTCCTTTGAT--TTGGTTTTTGATGAATGCTTGATTCT 357
                      * ***** ** **   **  *  *   *****   ** *** ** *   ** **      

consensus_6452#0      ATGTTGTTGGATAAATCGATGGTGGTATGGGGGTGATAGGGAGCAACTTAATTTAAGCCG 540
consensus_6452#1      ATAATGTGCAATTG-TTGATG--GATATCCGGTTGA----AATTTTTGTGATTTGTGCTA 410
                      **  ***   **   * ****  * ***  ** ***     *      * ****  **  

consensus_6452#0      ATGCATCGAGCCAGCGTTTTTTTTTTCCGCATTCGTGGAACCTCAAAGGTGCTAGTTTCT 600
consensus_6452#1      AAAAAAAAAAA------------------------------------------------- 421
                      *   *   *                                                   

consensus_6452#0      AAACTG 606
consensus_6452#1      ------