cluster # 6453

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Oryza sativa
cluster # 6453 cluster # 6453 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6453#0 length = 826 sequences # 2

consensus_6453#1 length = 410 sequences # 2

consensusID : consensus_6453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 826
fasta sequence

                              [CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGAACAGA-CCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAACACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCCAACGGNACAAAGATGGATTAGCTCAAGTAGCC-CAGATTTGCANCTTTATGTTGGNAACTCCCCCTGANGGGGGTCTNACNTTGAATAGG-ATTANCCTTGGGCCAGGGC]

[+] EMBL CA766513             [CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGAACAGA CCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAACACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCCAACGGNACAAAGATGGATTAGCTCAAGTAGCC CAGATTTGCANCTTTATGTTGGNAACTCCCCCTGANGGGGGTCTNACNTTGAATAGG ATTANCCTTGGGCCAGGGC]
[+] EMBL CB096527             [               AGGGGGAAGCACTTCAAGNTAAGGATGGCAAATCTGAAGATGCTGCAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAGTTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAACATGACAGAGAGAATGCAGACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGTGATAAAAGTGCACTAGATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATCCCATTCAAAATGCAAA CCCCGAACAGACCCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGNTGATTCTTGGGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCNAACGGNACAGAGATGGATTAGCTCAAGTAGCCACAGATATGCAGCTTTATGTTGGAAACTACCACTGGTGGTGTTCTAAC TTGAGTAGGAATTANCCTTGG        ]




>consensus_6453#0
CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTG
CAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGGGGTATCTGTAGAAG
TTGCTGAGAACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGTGAAC
ATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTGCAGG
ATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCAAAGA
TGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAAGGTG
GAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTAGATA
TTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCTTGTG
TGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTATCCC
ACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGAACAG
ACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAACACC
GAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCCAA
CGGNACAAAGATGGATTAGCTCAAGTAGCCCAGATTTGCANCTTTATGTTGGNAACTCCC
CCTGANGGGGGTCTNACNTTGAATAGGATTANCCTTGGGCCAGGGC

consensusID : consensus_6453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 410
fasta sequence

                              [CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATATGCAGCTTTATGTTGGAAACTACCACTGATGGTGTTCTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATCTTAGCTTGAAGGAGATGTATATTATGTAGCAGTGCAGTGCAGACCCTGGATGCTGGAGCAGTTCATTCCAGTCGTATTTATAACTGATGTTCAAAGGTTTTGTATCAAAGCTTAAAAAAAAAAA]

[+] EMBL CF329980             [CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATATGCAGCTTTATGTTGGAAACTACCACTGATGGTGTTCTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATCTTAGCTTGAAGGAGATGTATATTATGTAGCAGTGCAGTGCAGACCCTGGATGCTGGAGCAGTTCATTCCAGTCGTATTTATAACTGATGTTCAAAGGTTTTGTATCAAAGCTTAAAAAAAAAAA]
[-] EMBL CF329981             [                                                                                  GTGCCGATGGTACTGTTGAGAATTAAAGGCCCAACTGCAAACGGACCAGAGATGGATTAGCTCAAGTAGCCCAGATATGCAGCTTTATGTTGGAAACTCCCACTGATGGTGTTTTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATTTTAGCTTGAAGGAGATGTATATTATGTACCAGTCCAGTGCAGCCCCTGGATGCTGGACCAGTTCATTCCAGTGGTATTTATAACTGATGTTCAAAGGTTTGGTATCAAAGCTTAAAAA      ]




>consensus_6453#1
CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGCCAAC
ACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGAATTAGAGGACCAACTGC
AAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATATGCAGCTTTATGTTGGAAACT
ACCACTGATGGTGTTCTAACTTGAGTAGGATTAGCTTGTGCAGGGTCCATGTAGAAGTCT
TGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAAATTATCTTAGCTTGAAGGAG
ATGTATATTATGTAGCAGTGCAGTGCAGACCCTGGATGCTGGAGCAGTTCATTCCAGTCG
TATTTATAACTGATGTTCAAAGGTTTTGTATCAAAGCTTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6453#0      CCAGAGGACGAGACAAGGGGGAAGCACTTCAAGTTAAGGATGGCAAATCTGAAGATGCTG 60
consensus_6453#1      --------------CAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCG 46
                                     **     * **  *   * * * ***** *** ********** *

consensus_6453#0      CAAAGAACAAACGTGACAATAGTGCTGAAAATGGTCCGAAAGGTGG-GGTATCTGTAGAA 119
consensus_6453#1      ---AGCACAACGCCAACACCGAAGCTGATGTTGATTCTTGTGCCGATGGTACTGCTGAGA 103
                         ** ****     ***     *****   ** * *    *  *  ****    *   *

consensus_6453#0      GTTGCTGAG---AACATAAACAGAAGTGCGGCTGCTGAAAGTTCGCAGGATGGACGGTGT 176
consensus_6453#1      ATTAGAGGACCAACTGCAAACGGAACAGAGATGGATTAGCTCAAGTAGCACAGATA-TGC 162
                       **   *     *    **** ***  * *   * * *      * ** *  **   ** 

consensus_6453#0      GAACATGACAGAGAGAATGCAAACAATGGCGGTGACTTTATCAGGGATGATAATGCTGTG 236
consensus_6453#1      AGCTTTATGTTGGAAACTACCACTGATGGTGTT--CTAACTTGAGTAGGATTAGCTTGTG 220
                           *      ** * * * *   **** * *  **   *   * * *** *   ****

consensus_6453#0      CAGGATTCTATCAGTGGTGATCATGTGGAATATTCCAGAGATGGTGAAGCTGAAAGGGCA 296
consensus_6453#1      CAGGGTCCATGTAGAAGTCTTGCTGTAGTAGATAGTAGAAATGTTCAAACTGCCATGTAA 280
                      **** * *    **  **  *  *** * * **   *** *** * ** ***  * *  *

consensus_6453#0      AAGATGAACAGTAATGGTGAAGCCGTAGAAGCCGTAGATGGCGGAACTGAAGCATCAAAA 356
consensus_6453#1      ATTATCTTAGCT--TGAAGGAGATGTATATTATGTAG-CAGTGCAGTGCAGACCCTGGAT 337
                      *  **      *  **  * **  *** *    ****   * * *    *  *     * 

consensus_6453#0      GGTGGAGAAAGTGCTGACCCCAAAGATGATAACAACCGAAATGGCGATAAAAGTGCACTA 416
consensus_6453#1      GCTGGAGCA---GTTCATTCCAGTCGTATTTATAACTGATGTT-CAAAGGTTTTGTATCA 393
                      * ***** *   * * *  ***    *  * * *** **  *  * *      ** *  *

consensus_6453#0      GATATTGATGATCGTGGAGCTGAAGATTCTCACTGCAACAAAAACGGTGAAAATGTAGCT 476
consensus_6453#1      AAGCTTAAAAAAAAAAA------------------------------------------- 410
                       *  ** *  *                                                 

consensus_6453#0      TGTGTGGAAAATGGCAAAACTAATGAAGCTGGCAACACTGAGAACGGTGAAAATGTGGTA 536
consensus_6453#1      ------------------------------------------------------------
                                                                                  

consensus_6453#0      TCCCACGATGCTGAAAAGGATGACAAAAGAAAGGATNCCATTCAAAATGCAAACCCCCGA 596
consensus_6453#1      ------------------------------------------------------------
                                                                                  

consensus_6453#0      ACAGACCCTAACAGATGCTGGTGATGATGGTAAAACTGAAGATGCCGAGCACAACGNCAA 656
consensus_6453#1      ------------------------------------------------------------
                                                                                  

consensus_6453#0      CACCGAAGCTGATGTTGATTCTTGNGCCGATGGTACTGCTGAGAATTAGAGGACCAACTG 716
consensus_6453#1      ------------------------------------------------------------
                                                                                  

consensus_6453#0      CCAACGGNACAAAGATGGATTAGCTCAAGTAGCCCAGATTTGCANCTTTATGTTGGNAAC 776
consensus_6453#1      ------------------------------------------------------------
                                                                                  

consensus_6453#0      TCCCCCTGANGGGGGTCTNACNTTGAATAGGATTANCCTTGGGCCAGGGC 826
consensus_6453#1      --------------------------------------------------