Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6454 cluster # 6454       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6454#0 length = 1269 sequences # 4  
consensusID : consensus_6454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1269
fasta sequence 
                              [TCACCTCGTCCATCGTCTCCAGTAAAAATCAAGATCGGCAAGCCAAGTGCAGAGGCAACCACCACCACCACCTGGAGCAGAGCGAGCGAGCGAGCGAGCAGAGCACACTGTCATCAATGGCGGCGGCAGTGGCTGTGGCTGGGCCGTCCATGGAGGTGGAGCAGGACCTCCCGGGCTTCCGTTTCCACCCCACGGAGGAGGAGCTCCTCGACTTCTACCTCTCCCGCGTCGTCCTAGGCAAGAAGCTCCACTTCAACATCATCGGCACCCTCAACATCTACCGCCATGATCCCTGGGACCTCCCAGGCATGGCGAAGATCGGGGAGAGGGAGTGGTACTTCTTCGTGCCGCGGGACAGGAAGGCCGGGAACGGCGGGCGGCCGAACCGGACGACGGAGCGCGGGTTCTGGAAGGCGACGGGGTCGGACAGGGCGATCCGGAGCTCCGGCGACCCGAAGCGGGTGATCGGGCTCAAGAAGACGCTCGTCTTCTACCAGGGTCGCGCCCCGCGCGGCACCAAGACGGACTGGGTCATGAATGAGTACCGCCTCCCCGACTACGGCGCCGCCCGCGCCGCCGCGCCGCCTCCCAAGGAGGACATGGTGCTCTGCAAGATATACCGGAAGGCGACGCCACTGAAGGAGCTGGAGCAGAGAGCCTCGGCAATGGAAGAGATGCAGAGAGGATCAAGTCACGGAGACTACACGGCGACGAGAGCATCCCTCGTCCACGACGCCTCCGCCTCCACCGGCGACGACTACTTC-TCGTCGGACGACGTCCACGACAGCGGCTTCCTGATCCAGTCCTCATCCTCGTCGGCGGCGCCGTCCGGCAGCAGCAGCAAGAACGGCGGCGCTGGCGCACCAAGGGAAGCCAAGAAGGAAGAAGCAGACGTCACGGTCACGGTGGCGTCGGCGACGAGCCTACAGCTCCCGGCGGTGAGCCAGCTGCCGAGCCCGCAGCTTCCGGCGATGGACTGGCTGCAGGACCCGTTCCTGACGCAGCTGCGCAGCCCGTGGCAGGACCAGCACTGCCTGTCTCCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAGAATTACATTGTGCATCGAAGCAAGAGGAGTCGATCACGATCTCCAGATGCATGTGCAAGAGCAAGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGATTCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAGATAAAAAAA]

[+] EMBL AK107090             [TCACCTCGTCCATCGTCTCCAGTAAAAATCAAGATCGGCAAGCCAAGTGCAGAGGCAACCACCACCACCACCTGGAGCAGAGCGAGCGAGCGAGCGAGCAGAGCACACTGTCATCAATGGCGGCGGCAGTGGCTGTGGCTGGGCCGTCCATGGAGGTGGAGCAGGACCTCCCGGGCTTCCGTTTCCACCCCACGGAGGAGGAGCTCCTCGACTTCTACCTCTCCCGCGTCGTCCTAGGCAAGAAGCTCCACTTCAACATCATCGGCACCCTCAACATCTACCGCCATGATCCCTGGGACCTCCCAGGCATGGCGAAGATCGGGGAGAGGGAGTGGTACTTCTTCGTGCCGCGGGACAGGAAGGCCGGGAACGGCGGGCGGCCGAACCGGACGACGGAGCGCGGGTTCTGGAAGGCGACGGGGTCGGACAGGGCGATCCGGAGCTCCGGCGACCCGAAGCGGGTGATCGGGCTCAAGAAGACGCTCGTCTTCTACCAGGGTCGCGCCCCGCGCGGCACCAAGACGGACTGGGTCATGAATGAGTACCGCCTCCCCGACTACGGCGCCGCCCGCGCCGCCGCGCCGCCTCCCAAGGAGGACATGGTGCTCTGCAAGATATACCGGAAGGCGACGCCACTGAAGGAGCTGGAGCAGAGAGCCTCGGCAATGGAAGAGATGCAGAGAGGATCAAGTCACGGAGACTACACGGCGACGAGAGCATCCCTCGTCCACGACGCCTCCGCCTCCACCGGCGACGACTACTTC TCGTCGGACGACGTCCACGACAGCGGCTTCCTGATCCAGTCCTCATCCTCGTCGGCGGCGCCGTCCGGCAGCAGCAGCAAGAACGGCGGCGCTGGCGCACCAAGGGAAGCCAAGAAGGAAGAAGCAGACGTCACGGTCACGGTGGCGTCGGCGACGAGCCTACAGCTCCCGGCGGTGAGCCAGCTGCCGAGCCCGCAGCTTCCGGCGATGGACTGGCTGCAGGACCCGTTCCTGACGCAGCTGCGCAGCCCGTGGCAGGACCAGCACTGCCTGTCTCCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAGAATTACATTGTGCATCGAAGCAAGAGGAGTCGATCACGATCTCCAGATGCATGTGCAAGAGCAAGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGATTCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTT                 ]
[+] EMBL BQ908954             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCACCGGCGACGACTACTTCTTCGTCGGACGACGTCCACGACAGCGGCTTCCTGATCCAGTCCTCATCCTCGTCGGCGGCGCCGTCCGGCAGCAGCAGCAAGAACGGCGGCGCTGGCGCACCAAGGGAAGCCAAGAAGGAAGAAGCAGACGTCACGGTCACGGTGGCGTCGGCGACGAGCCTACAGCTCCCGGCGGTGAGCCAGCTGCCGAGCCTGCAGCTTCCGGCGATGGACTGGCTGCAGGACCCGTTCCTGACGCAGCTGCGCAGCCCGTGGCAGGACCAGCACTGCCTGTCTCCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAGAATTACATTGTGCATCGAAGCAAGAGGATTCGATCACGATCTCCAGATGCATGTGCAAG CCAAGAGATCAAATCACCCGTCG CGAAGAACAA TAGCGTAGAATGGCTACCTGTGGATTCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAaaa       ]
[+] EMBL CF330097             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAGAATTACATTGTGCATCGAAGCAAGAGGAGTCGATCACGATCTCCAGATGCATGTGCAAGAGCAAGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGATTCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAGATAAAAAA ]
[-] EMBL CF330098             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAGAATTACATTGTGCATCGAAGCAAGAGGAGTCGATCACGATCTCCAGATGCATGTGCAAGAGCAAGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGATTCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAGATAAAAAAA]




>consensus_6454#0
TCACCTCGTCCATCGTCTCCAGTAAAAATCAAGATCGGCAAGCCAAGTGCAGAGGCAACC
ACCACCACCACCTGGAGCAGAGCGAGCGAGCGAGCGAGCAGAGCACACTGTCATCAATGG
CGGCGGCAGTGGCTGTGGCTGGGCCGTCCATGGAGGTGGAGCAGGACCTCCCGGGCTTCC
GTTTCCACCCCACGGAGGAGGAGCTCCTCGACTTCTACCTCTCCCGCGTCGTCCTAGGCA
AGAAGCTCCACTTCAACATCATCGGCACCCTCAACATCTACCGCCATGATCCCTGGGACC
TCCCAGGCATGGCGAAGATCGGGGAGAGGGAGTGGTACTTCTTCGTGCCGCGGGACAGGA
AGGCCGGGAACGGCGGGCGGCCGAACCGGACGACGGAGCGCGGGTTCTGGAAGGCGACGG
GGTCGGACAGGGCGATCCGGAGCTCCGGCGACCCGAAGCGGGTGATCGGGCTCAAGAAGA
CGCTCGTCTTCTACCAGGGTCGCGCCCCGCGCGGCACCAAGACGGACTGGGTCATGAATG
AGTACCGCCTCCCCGACTACGGCGCCGCCCGCGCCGCCGCGCCGCCTCCCAAGGAGGACA
TGGTGCTCTGCAAGATATACCGGAAGGCGACGCCACTGAAGGAGCTGGAGCAGAGAGCCT
CGGCAATGGAAGAGATGCAGAGAGGATCAAGTCACGGAGACTACACGGCGACGAGAGCAT
CCCTCGTCCACGACGCCTCCGCCTCCACCGGCGACGACTACTTCTCGTCGGACGACGTCC
ACGACAGCGGCTTCCTGATCCAGTCCTCATCCTCGTCGGCGGCGCCGTCCGGCAGCAGCA
GCAAGAACGGCGGCGCTGGCGCACCAAGGGAAGCCAAGAAGGAAGAAGCAGACGTCACGG
TCACGGTGGCGTCGGCGACGAGCCTACAGCTCCCGGCGGTGAGCCAGCTGCCGAGCCCGC
AGCTTCCGGCGATGGACTGGCTGCAGGACCCGTTCCTGACGCAGCTGCGCAGCCCGTGGC
AGGACCAGCACTGCCTGTCTCCCTACGCCCATCTGCTCTACTACTAAGCAAGGGGCAGAG
AATTACATTGTGCATCGAAGCAAGAGGAGTCGATCACGATCTCCAGATGCATGTGCAAGA
GCAAGAGATCAAATCACCCGTCGACGAAGAACAAGTAGCGTAGAATGGCTAGCTGTGGAT
TCGATTGTACATATAGTAGTAGCACCGAGATATCAATCAATCTTTTGGTCTTCTCTCAAG
ATAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)