These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 758 fasta sequence [TCTTTTTTTTTTATGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCGTTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACC-TGCATTCATTTTTGCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTAGTATTCAAGGCACTGG-ACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGACAATATGTCCTGGTCGTACATATTCCTTCTGGCATTATCATCCTCGTAACAGTTGGTAAATTCTATCGGAAGGCTTTTCCCATCGTACACGGCCTTCTTTCGGGTGATGAGCTCTAAGACCACGATACCGAAACTGTAGACGTCACTCTTCAGTCTAAAATTGCCTGTTATCATATACACAGGATCTATGTAGCCCATGTCGGCACACACGCTTCGGTGCTTGGTTTTCAATACGGACTCTGATGACCCAAAATCTGAGACTTTAGGCATAAAGTTGTCGTCAAGGAGAATATTGGCAGGTTTGATATCACCATGAAAAATGCAGCGGCGGGAATGCGAGTGCATGTAAGTAAGAGCTTCCGCAGAGCCA] [+] EMBL CB619380 [TCTTTTTTTTTTATGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCGTTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACC TGCATTCATTTTTGCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTAGTATTCAAGGCACTGG ACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGACAATATGTCCTGGTCGTACATATTCCTTCTGGCATTATCATCCTCGTAACAGTTGGTAAATTCTATCGGAAGGCTTTTCCCATCGTACACGGCCTTCTTTCGGGTGATGAGCTCTAAGACCACGATACCGAAACTGTAGACGTCACTCTTCAGTCTAAAATTGCCTGTTATCATATACACAGGATCTATGTAGCCCATGTCGGCACACACGCTTCGGTGCTTGGTTTTCAATACGGACTCTGATGACCCAAAATCTGAGACTTTAGGCATAAAGTTGTCGTCAAGGAGAATATTGGCAGGTTTGATATCACCATGAAAAATGCA ] [-] EMBL C22611 [ TTTTTTATGCTGCTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACATACTAATTAAAACGACACTTCCCCGCCAAAAAGATAAATTAAAATGACCCGTTGGTCAACTCAAACCAACG TCGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACATACGGGTTGTCTGAACATCGGACCTTGCATTCA TTTTCCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTTGTATTCAAGGCACTGGNACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGACAATATGTCCTGGTCGTACATATTCCTTCTGGCATTATCATCCTCGTAACAGTTGGTAAA ] [+] EMBL CB619117 [ AATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCGTTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACC TGCATTCATTTTTGCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTAGTATTCAAGGCACTGG ACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGACAATATGTCCTGGTCGTACATATTCCTTCTGGCATTATCATCCTCGTAACAGTTGGTAAATTCTATCGGAAGGCTTTTCCCATCGTACACGGCCTTCTTTCGGGTGATGAGCTCTAAGACCACGATACCGAAACTGTAGACGTCACTCTTCAGTCTAAAATTGCCTGTTATCATATACACAGGATCTATGTAGCCCATGTCGGCACACACGCTTCGGTGCTTGGTTTTCAATACGGACTCTGATGACCCAAAATCTGAGACTTTAGGCATAAAGTTGTCGTCAAGGAGAATATTGGCAGGTTTGATATCACCATGAAAAATGCAGCGGCGGGAATGCGAGTGCATGTAAGTAAGAGCTTCCGCAGAGCCA] consensusID : consensus_6467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [TTTTTTTTTTTTTTTGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCGTTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACCTGCATTCATTTTTGCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTAGTATTCAAGGCACTGGACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGAAATATGTCCTGGGCGGACATATTCCTTCTGGCATTATCATCCTCGAACAGTTGGGAAATTCTTTCGGAAGGTTTTTCCCATGGAACACGGCCTTCTTTCGGGGGATGAACTTTTAAACCACCAAACCGAACTGGGAAACCCCACTCCTTAAATCAAAAATTGCCTGTTTCATAAACACCGGATTTTATTTGTCCCCTTGGGGGCCACACCCCTTCGGGGGCTGGGTTTTAAAATAGGGTCTTTAAAACACCAAAATTTGAAACTTTTGGGGT] [+] EMBL CA759461 [TTTTTTTTTTTTTTTGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAATGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCGTTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGACGATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACCTGCATTCATTTTTGCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTCTTGTCTATGTAGTATTCAAGGCACTGGACAGCAATGCCGGCCATTCTGTCGAGGCACTCCATGCAGTGAGGTTGTAGAGCCTCTGCAGAAATATGTCCTGGGCGGACATATTCCTTCTGGCATTATCATCCTCGAACAGTTGGGAAATTCTTTCGGAAGGTTTTTCCCATGGAACACGGCCTTCTTTCGGGGGATGAACTTTTAAACCACCAAACCGAACTGGGAAACCCCACTCCTTAAATCAAAAATTGCCTGTTTCATAAACACCGGATTTTATTTGTCCCCTTGGGGGCCACACCCCTTCGGGGGCTGGGTTTTAAAATAGGGTCTTTAAAACACCAAAATTTGAAACTTTTGGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6467#0 -TCTTTTTTTTTTATGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAA 59 consensus_6467#1 TTTTTTTTTTTTTTTGCTACTTAATTTATTTTTGCTTTTAATTGCCACTTTGTTGGTAAA 60 * ********** ********************************************** consensus_6467#0 TGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCG 119 consensus_6467#1 TGGTACACACACTAATTAAAACGACACTTCCCCGCTAAAAAGATAAATTAAAATGACCCG 120 ************************************************************ consensus_6467#0 TTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGAC 179 consensus_6467#1 TTGGTCAACTGAAACCAACGTTTGGACATTTGCTGGGGGATATGATAATAAATTAACGAC 180 ************************************************************ consensus_6467#0 GATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACCTGCATTCATTTTT 239 consensus_6467#1 GATACAAAGCGAAACTATCAACGTACGGGTTGTCTGAACATCGGACCTGCATTCATTTTT 240 ************************************************************ consensus_6467#0 GCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTC 299 consensus_6467#1 GCTGCAACCTTTGCTCTCAATTGGATAAGCTCCTGTAGCGCCTCCGCCATAGTCGGCCTC 300 ************************************************************ consensus_6467#0 TTGTCTATGTAGTATTCAAGGCACTGGACAGCAATGCCGGCCATTCTGTCGAGGCACTCC 359 consensus_6467#1 TTGTCTATGTAGTATTCAAGGCACTGGACAGCAATGCCGGCCATTCTGTCGAGGCACTCC 360 ************************************************************ consensus_6467#0 ATGCAGTGAGGTTGTAGAGCCTCTGCAGACAATATGTCCTGGTCGTACATATTCCTTCTG 419 consensus_6467#1 ATGCAGTGAGGTTGTAGAGCCTCTGCAGA-AATATGTCCTGGGCGGACATATTCCTTCTG 419 ***************************** ************ ** ************** consensus_6467#0 GCATTATCATCCTCGTAACAGTTGGTAAATTCTATCGGAAGGCTTTTCCCATCGTACACG 479 consensus_6467#1 GCATTATCATCCTCG-AACAGTTGGGAAATTCTTTCGGAAGGTTTTTCCCATGGAACACG 478 *************** ********* ******* ******** ********* * ***** consensus_6467#0 GCCTTCTTTCGGGTGATGAGCTCTAAGACCACGATACCGAAACTGTAGACGTCACTCTTC 539 consensus_6467#1 GCCTTCTTTCGGGGGATGAACTTTTAAACCACCAAACCGAACTGGGAAACCCCACTCCTT 538 ************* ***** ** * * ***** * ****** * * ** ***** * consensus_6467#0 AG-TCTAAAATTGCCTGTTATCATATACACAGGATCTATGTAGCCCATGTCGG---CACA 595 consensus_6467#1 AAATCAAAAATTGCCTGTT-TCATAAACACCGGATTTTATTTGTCCCCTTGGGGGCCACA 597 * ** ************* ***** **** **** * * * ** * ** **** consensus_6467#0 CACGCTTCGGTGCTTGGTTTTCAA-TACGGACTCTGATGACCCAAAATCTGAGACTTTAG 654 consensus_6467#1 CCCCTTCGGGGGCTGGGTTTTAAAATAGGGTCTTTAAAACACCAAAATTTGAAACTTTTG 657 * * * ** *** ****** ** ** ** ** * * ******* *** ***** * consensus_6467#0 GCATAAAGTTGTCGTCAAGGAGAATATTGGCAGGTTTGATATCACCATGAAAAATGCAGC 714 consensus_6467#1 GGGT-------------------------------------------------------- 661 * * consensus_6467#0 GGCGGGAATGCGAGTGCATGTAAGTAAGAGCTTCCGCAGAGCCA 758 consensus_6467#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||