cluster # 6468

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Oryza sativa
cluster # 6468 cluster # 6468 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6468#0 length = 1090 sequences # 3

consensus_6468#1 length = 161 sequences # 1

consensusID : consensus_6468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1090
fasta sequence

                              [AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCTCGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGCGCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAACGCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGGACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCTTTTATATATATAGGA]

[+] EMBL AK111058             [AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCTCGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGCGCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAACGCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGGACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCTTTTATATATATAGGA]
[+] EMBL C99506               [                                                                                                                                                                                                                                         CTCTCCCTGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACAGCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCCGGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGCTCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGAATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCTGGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C99505               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAGCCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCTTCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACCCAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAACCGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCGGAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTGCACTTCGGAAATGAAAAAAAAAAaaaaaa                                         ]




>consensus_6468#0
AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCT
CGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGC
GCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAAC
GCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCC
TGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACA
GCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCC
GGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGC
TCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGA
ATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCT
GGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGG
ACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAG
CCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCT
TCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACC
CAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAAC
CGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCG
GAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTT
GCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTG
CACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACTCCTTTTAT
ATATATAGGA

consensusID : consensus_6468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [TTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTTC]

[+] EMBL CF330399             [TTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTTC]




>consensus_6468#1
TTCTGGACTCTGGAGTTTAATTTTACACCTTTTGCATGTATGGAATTAGGGGGTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTTTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6468#0      AACAGGTACAAGTCCGTCCGCCGCCGCCGCCGAGAGCGAGAGATGGAGATGGATCCCCCT 60
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      CGGCTGGGCATGGGCGCGTACTCCGGCCCCGTCCGCCCGGTCGGGGACGGGGACGGCGGC 120
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GCCGCGGGCGAGACGATGCTGCTCTGGGCCCTCGGCCAGCCGGCAGCGCAGCGCCACAAC 180
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GCCTTCGTCCGCCACGGCGCGCACTCCCTCACCCTCGACGCTGCGGCCGCCGTCTCTCCC 240
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      TGCTCCAGTCCCCGTCCTCCATGTCCACGCCCGGCGTCACCGGCGCCGTTGTGTGGGACA 300
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GCGGCGTCGTCCTCGCCAAGTTCCTCGAGCACGCCGTCGACTCGGGCCTCCTTACCCTCC 360
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GGGCCGCGCGGGCGCTCGAGCTGGGAGCGGGCTGCGGCCTTGCTGGCTGCGTCGCCGCGC 420
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      TCCTCGGAGCCCACGTGCTGCTCACCGACCTCCCTGACCGCCTCAAGCTCCTCAGGAAGA 480
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      ATATCGACCTCAACGTCGGGGACGACGCAAGGGGCTCTGCTCGGGTCGCCCAACTCGTCT 540
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GGGCTGATGATCCTCACCCGGACTTGCTCAACCCACCTCTAGATTACGTGCTTGGGTCGG 600
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      ACGTGATCTACAGCGAGGAGGCAGTGGATGATCTGCTGCTCACCCTCAAGCACCTCTCAG 660
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      CCCCTCACACCACCATCATCCTCGCAGCAGAACTCCGCAATGATGCTGTACTGGAGTGCT 720
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      TCTTGGAGGCAGCAATGGCGGACTTCCAAGTCGGCTGCATCGAGCAACAGCAATGGCACC 780
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      CAGATTTCCGCTCTACACGTGTTGCCTTGTTCATCTTGCTCAAGAAACCACCTTCCCAAC 840
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      CGGACGTGCTGCTCTAGCTCCAAATTTTGGGCGTCCCTCATCGAAAGCTGAATTGTAGCG 900
consensus_6468#1      ------------------------------------------------------------
                                                                                  

consensus_6468#0      GAGTACCAGCATTTACTCCATCCTTTGTTCTGGACTCTGGAGTTTAATTTTACACCTTTT 960
consensus_6468#1      ---------------------------TTCTGGACTCTGGAGTTTAATTTTACACCTTTT 33
                                                 *********************************

consensus_6468#0      GCATGTATGGAATTAGGGGGTCAAAACTGTACGCTTTTGTTTTCTCCTATTGATTACGTG 1020
consensus_6468#1      GCATGTATGGAATTAGGGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 93
                      **************************    *                 *   *  *    

consensus_6468#0      CACTTCGGAAATGAAATTGAAAATTGTAGAGACACCATTTAATCGGTCTACT-----CCT 1075
consensus_6468#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCT 153
                       *      ***  ***   ****    * * * *  *   **       *       ***

consensus_6468#0      TTTATATATATAGGA 1090
consensus_6468#1      TTTTTTTC------- 161
                      *** * *