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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1536 fasta sequence
[GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATAGCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAACCGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTCCCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGTCGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA]
[+] EMBL AK101968 [GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATAGCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAACCGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTCCCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGTCGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATT ]
[+] EMBL CF330415 [ CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGTTTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCATTATACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTT ]
[-] EMBL CA759508 [ agacaagGGGGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTATGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCCGTCCACACTAGAAGCAGCGTTCCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCACCGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA]
consensusID : consensus_6469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[GGACGAGACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNGG]
[+] EMBL CA764619 [GGACGAGACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATTCAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCTGTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6469#0 GGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACCCCGGAATA 60
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 GCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTATCGGGAAAC 120
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTCGTGCGCTC 180
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCGCCGTTTGT 240
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCAATGGGCGC 300
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTCTGGTCGTA 360
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCCCAGATCAA 420
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 GGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTATCACTTCA 480
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 GCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACAGTTGCATA 540
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 TTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTCAGTCACAA 600
consensus_6469#1 ------------------------------------------------------GGACGA 6
** *
consensus_6469#0 TCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTAT 660
consensus_6469#1 GACAAGGGGCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAACCTTCCTAT 66
* ***************************************************
consensus_6469#0 CGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGG 720
consensus_6469#1 CGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGTTTCCAAGG 126
************************************************************
consensus_6469#0 TGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATAC 780
consensus_6469#1 TGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTTAAGAATAC 186
************************************************************
consensus_6469#0 TCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTT 840
consensus_6469#1 TCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGACCGCTGTT 246
************************************************************
consensus_6469#0 CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAGATTGCGCT 900
consensus_6469#1 CCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATCTGATTATCCAGATTGCGCT 306
**************************************** *******************
consensus_6469#0 TGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAAC 960
consensus_6469#1 TGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATACTCTCAAC 366
************************************************************
consensus_6469#0 ATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATT 1020
consensus_6469#1 ATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCACTACGTATT 426
************************************************************
consensus_6469#0 CAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGT 1080
consensus_6469#1 CAATCCAGGCCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACATGGCATGT 486
******** ***************************************************
consensus_6469#0 TGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGT 1140
consensus_6469#1 TGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTGTACAAGGT 546
************************************************************
consensus_6469#0 AAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGT 1200
consensus_6469#1 AAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGGAGCCAGGT 606
************************************************************
consensus_6469#0 GATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGC 1260
consensus_6469#1 GATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAGAGAAAGGC 666
************************************************************
consensus_6469#0 GCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCT 1320
consensus_6469#1 GCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGACATTTTCT 726
************************************************************
consensus_6469#0 GTGCGCATATGGTCATATATATGG-TTGTTAGACATGGTCATGTGTGCTTGTATGCAGTG 1379
consensus_6469#1 GTGCGCATATGGTCATATATATGGGTTGNTAGACATGGTCATGTGTGCTTGTATGCAGNG 786
************************ *** ***************************** *
consensus_6469#0 GGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATTTTGTTCC 1439
consensus_6469#1 G----------------------------------------------------------- 787
*
consensus_6469#0 GTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACCATGGCAC 1499
consensus_6469#1 ------------------------------------------------------------
consensus_6469#0 CGAATGAAAATTTTGTAGTATCATCAAAAAAAAAAAA 1536
consensus_6469#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||