cluster # 6473

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Oryza sativa
cluster # 6473 cluster # 6473 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6473#0 length = 946 sequences # 3

consensus_6473#1 length = 440 sequences # 1

consensusID : consensus_6473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 946
fasta sequence

                              [TTTGGAGCAATGCGGGCTGCGAATTCCCCCTTTTGGATTTCTGTTTCTCGTTGAGAATATAAATTGATGCATTAACAATGTGCTCCCCACCTTCATACTTTCTCTAATGGAAGGAAAAAAGATTGGTCAGGGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAGCTGGAGGGTCTAGTAACTTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACCGAGGCATTTTGAAGATAGCTGATTTTGGCCTAGCAAGTTTCTTTGATCCTGAACAACGTCACCCTTTGACTAGTCGTGTGGTCACACTTTGGTATAGACCACCAGAACTTTTGCTTGGTGCCACAAATTATGGTGTTGCTGTAGATCTTTGGAGTTCTGGCTGCATTCTTGCTGAGTTATATGCTGGCAAGCCTATCATGCCTGGTAGAACTGAGGTTGAGCAGTTACATAAAATATTTAAACTCTGTGGTTCACCATCAGAGGACTATTGGAGGAAGTCTAAACTTCCTCATGCCACAATTTTTAAGCCACAGCATCCATATGCTAGGCGTGTATCAGAAACATTTAAAGATTTTCCTCCGCCTGCTGTGGCGTTAGTGGATGTTCTTCTTTCAGTTGATCCAGCAGATCGAGGAACAGCATCTTCTGCATTGCAA]

[+] EMBL CF305783             [TTTGGAGCAATGCGGGCTGCGAATTCCCCCTTTTGGATTTCTGTTTCTCGTTGAGAATATAAATTGATGCATTAACAATGTGCTCCCCACCTTCATACTTTCTCTAATGGAAGGAAAAAAGATTGGTCAGGGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAGCTGGAGGGTCTAGTAACTTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB624159             [                                                                                                                                         ACAGTCTTGTATACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAGCTGGAGGGTCTAGTAACTTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACCGAGGCATTTTGAAGATAGCTGATTTTGGCCTAGCAAGTTTCTTTGATCCTGAACAACGTCACCCTTTGACTAGTCGTGTGGTCACACTTTGGTATAGACCACCAGAACTTTTGCTTGGTGCCACAAATTATGGTGTTGCTGTAGATCTTTGGAGTTCTGGCTGCATTCTTGCTGAGTTATATGCTGGCAAGCCTATCATGCCTGGTAGAACTGAGGTTGAGCAGTTACATAAAATATTTAAACTCTGTGGTTCACCATCAGAGGACTATTGGAGGAAGTCTAAACTTCCTCATGCCACAATTTTTAAGCCACAGCATCCATATGCTAGGCGTGTATCAGAAACATTTAAAGATTTTCCTCCGCCTGCTGTGGCGTTAGTGGATGTTCTTCTTTCAGTTGATCCAGCAGATCGAGGAACAGCATCTTCTGCATTGCAA]
[+] EMBL CB625861             [                                                                                                                                         ACAGTAACGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAGCTGGAGGGTCTAGTAACTTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACCGAGGCATTTTGAAGATAGCTGATTTTGGCCTAGCAAGTTTCTTTGATCCTGAACAACGTCACCCTTTGACTAGTCGTGTGGTCACACTTTGGTATAGACCACCAGAACTTTTGCTTGGTGCCACAAATTATGGTGTTGCTGTAGATCTTTGGAGTTCTGGCTGCATTCTTGCTGAGTTATATGCTGGCAAGCCTATCATGCCTGGTAGAACTGAGGTTGAGCAGTTACATAAAATATTTAAACTCTGTGGTTCACCATCAGAGGACTATTGGAGGAAGTCTAAACTTCCTCATGCCACAATTTTTAAGCCACAGCATCCATATGCTATGCGTGTATCAGAAACATTTAAAGATTTTCCTCCGCCTGCTGTGGCGTTAGTGGATGTTCTTCTTTCAGTTGATCCAGCAGATCGAGGAACAGCATCT            ]




>consensus_6473#0
TTTGGAGCAATGCGGGCTGCGAATTCCCCCTTTTGGATTTCTGTTTCTCGTTGAGAATAT
AAATTGATGCATTAACAATGTGCTCCCCACCTTCATACTTTCTCTAATGGAAGGAAAAAA
GATTGGTCAGGGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGAT
TGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGC
CAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAGCTGGAGGGTCT
AGTAACTTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCT
AGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACAT
GCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACAT
TAAGGGTTCCAATCTTTTGATTGACAACCGAGGCATTTTGAAGATAGCTGATTTTGGCCT
AGCAAGTTTCTTTGATCCTGAACAACGTCACCCTTTGACTAGTCGTGTGGTCACACTTTG
GTATAGACCACCAGAACTTTTGCTTGGTGCCACAAATTATGGTGTTGCTGTAGATCTTTG
GAGTTCTGGCTGCATTCTTGCTGAGTTATATGCTGGCAAGCCTATCATGCCTGGTAGAAC
TGAGGTTGAGCAGTTACATAAAATATTTAAACTCTGTGGTTCACCATCAGAGGACTATTG
GAGGAAGTCTAAACTTCCTCATGCCACAATTTTTAAGCCACAGCATCCATATGCTAGGCG
TGTATCAGAAACATTTAAAGATTTTCCTCCGCCTGCTGTGGCGTTAGTGGATGTTCTTCT
TTCAGTTGATCCAGCAGATCGAGGAACAGCATCTTCTGCATTGCAA

consensusID : consensus_6473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [CGGCGGCGGCGATGGCGATGGCGGCGTGCAGGGTGAGGAGCCCCGTGCCGAGGGCGGTGGAGGGGGAGCAGGTGGCGGCGGGGTGGCCGCCGTGGCTCGTCTCCGTCGCCGCGGAGGCCGTGCGCGGGTGGGTGCCTCGCCGCGCCGAGTCGTTCGAGAAGCTCGACAAGATTGGTCAGGGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAAGCTGGGAGGGTCTAAGTAACTNTCAAGAATGTCTTGTTAGCTTATATNTTGTTTTTGAGTTACATGGAACATGACCTANCTGGGACTAGGCTTCTTTTCCTG]

[+] EMBL C22409               [CGGCGGCGGCGATGGCGATGGCGGCGTGCAGGGTGAGGAGCCCCGTGCCGAGGGCGGTGGAGGGGGAGCAGGTGGCGGCGGGGTGGCCGCCGTGGCTCGTCTCCGTCGCCGCGGAGGCCGTGCGCGGGTGGGTGCCTCGCCGCGCCGAGTCGTTCGAGAAGCTCGACAAGATTGGTCAGGGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCCTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAAGCTGGGAGGGTCTAAGTAACTNTCAAGAATGTCTTGTTAGCTTATATNTTGTTTTTGAGTTACATGGAACATGACCTANCTGGGACTAGGCTTCTTTTCCTG]




>consensus_6473#1
CGGCGGCGGCGATGGCGATGGCGGCGTGCAGGGTGAGGAGCCCCGTGCCGAGGGCGGTGG
AGGGGGAGCAGGTGGCGGCGGGGTGGCCGCCGTGGCTCGTCTCCGTCGCCGCGGAGGCCG
TGCGCGGGTGGGTGCCTCGCCGCGCCGAGTCGTTCGAGAAGCTCGACAAGATTGGTCAGG
GAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTAA
AGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATCC
TTATTTTGCGACGGCTTGATCATCCAAATATTATTAAAGCTGGGAGGGTCTAAGTAACTN
TCAAGAATGTCTTGTTAGCTTATATNTTGTTTTTGAGTTACATGGAACATGACCTANCTG
GGACTAGGCTTCTTTTCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6473#0      -----------------------------------------------TTTGGAGCAATGC 13
consensus_6473#1      CGGCGGCGGCGATGGCGATGGCGGCGTGCAGGGTGAGGAGCCCCGTGCCGAGGGCGGTGG 60
                                                                         * **  ** 

consensus_6473#0      --GGGCTGCGAATTCCCCCTTTTGGATTTCTGTTTCTCGTTGAGAATATAAATTGATGCA 71
consensus_6473#1      AGGGGGAGCAGGTGGCGGCGGGGTGGCCGCCGTGGCTCGTCTCCGTCGCCGCGGAGGCCG 120
                        ***  **   *  *  *     *    * **  *****                  * 

consensus_6473#0      TTAACAA-TGTGCTCCCCACCTTCATACTTTCTCTAATGGAAGGAAAAAAGATTGGTCAG 130
consensus_6473#1      TGCGCGGGTGGGTGCCTCGCCGCGCCGAGTCGTTCGA-GAAGCTCGACAAGATTGGTCAG 179
                      *   *   ** *  ** * **        *  *   * * *     * ************

consensus_6473#0      GGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTA 190
consensus_6473#1      GGAACATACAGTAATGTTTACAGAGCTCGCGATCTTGAAAAGGAGAAGATTGTTGCCCTA 239
                      ************************************************************

consensus_6473#0      AAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATC 250
consensus_6473#1      AAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCCAGGGAAATC 299
                      ************************************************************

consensus_6473#0      CTTATTTTGCGACGGCTTGATCATCCAAATATTATTAA-GCTGG-AGGGTCTA-GTAACT 307
consensus_6473#1      CTTATTTTGCGACGGCTTGATCATCCAAATATTATTAAAGCTGGGAGGGTCTAAGTAACT 359
                      ************************************** ***** ******** ******

consensus_6473#0      T-CAAGAATGTCTTGT-AGCTTATATCTTGTTTTTGAGT-ACATGGAACATGACCTAGCT 364
consensus_6473#1      NTCAAGAATGTCTTGTTAGCTTATATNTTGTTTTTGAGTTACATGGAACATGACCTANCT 419
                        ************** ********* ************ ***************** **

consensus_6473#0      GG-ACTAG-CTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGGTTAAATGTTACATGC 422
consensus_6473#1      GGGACTAGGCTTCTTTTCCTG--------------------------------------- 440
                      ** ***** ************                                       

consensus_6473#0      AGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTCGTCACATTCTGCACCGTGACATTA 482
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      AGGGTTCCAATCTTTTGATTGACAACCGAGGCATTTTGAAGATAGCTGATTTTGGCCTAG 542
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      CAAGTTTCTTTGATCCTGAACAACGTCACCCTTTGACTAGTCGTGTGGTCACACTTTGGT 602
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      ATAGACCACCAGAACTTTTGCTTGGTGCCACAAATTATGGTGTTGCTGTAGATCTTTGGA 662
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      GTTCTGGCTGCATTCTTGCTGAGTTATATGCTGGCAAGCCTATCATGCCTGGTAGAACTG 722
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      AGGTTGAGCAGTTACATAAAATATTTAAACTCTGTGGTTCACCATCAGAGGACTATTGGA 782
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      GGAAGTCTAAACTTCCTCATGCCACAATTTTTAAGCCACAGCATCCATATGCTAGGCGTG 842
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      TATCAGAAACATTTAAAGATTTTCCTCCGCCTGCTGTGGCGTTAGTGGATGTTCTTCTTT 902
consensus_6473#1      ------------------------------------------------------------
                                                                                  

consensus_6473#0      CAGTTGATCCAGCAGATCGAGGAACAGCATCTTCTGCATTGCAA 946
consensus_6473#1      --------------------------------------------