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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 993 fasta sequence
[AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA]
[+] EMBL CA766523 [AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATGTATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACTATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGCTAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTAAGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTGCTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCACTAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAATGTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGTAATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAGTTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGTGAANAAGGTTTCAACTGAGCTGATTATAGNGCTGNAAAGCGGCTTAACACTATGTAAATCATGNGGTATGCNCCATGGATCA ]
[+] EMBL CF196749 [ CTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACCTCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAA GAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTATATCATTTCAGTTTTTGCATAACNNNNNNANAAA]
[+] EMBL CF330585 [ GCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGAGTACTATTGTTTATGTATATCATTTCAGTT ]
consensusID : consensus_6474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence
[ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA]
[+] EMBL AA753693 [ACCCTTAANNCGANGGTAAGGGCACCGGAAANNAGNTGNAAGGNGAATTTTTAAAGGGTATAAANCNAATTGNGNAANAAGTANCCCNGAAGNGGTAGTTTCTTCACCCAANACNTCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAAATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAGTTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAAGTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGTGAAGAGGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATCATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTTGTGCACTTGCCATGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6474#0 AGATCAGGGTTGCCCATTTGCCATGGTTTCTGGTACTGTCTGTGCAGAATGGCTGGAATG 60
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 TATGGGCAGCTATCAGAAAATGTGTGCAAAGTCACCATATTTTAGCAAACTTTTGAAACT 120
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 ATCAGAAATTTTTGAGGAAGTTGCTATCTTCATACAGTACCCCGTCTGATGGGCTTGAGC 180
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 TAGGAAGCACCAGAAGCTCAGTTCTAGCTGATAGACCATTAAGTGCTCCATTCATGATTA 240
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 AGGGCGAATAGTGCTGAGAAAGTGTGAGGTCTCTTCCCTGGCCAAACTGGCTAAAAGGTG 300
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 CTGAGAAGTCTCTCCACCGATAATTTCAGCTCGTCAGTCATTCGGAGCTTGGTGAAGCAC 360
consensus_6474#1 ------------------------------------------------------------
consensus_6474#0 TAGGAAGGCACTTTGCAACATTGTATCTCTAGCTAAGCTTCAAGCCTTCAACTGCAGAAT 420
consensus_6474#1 ------------------------------------------ACCCTTAANNCGANG--- 15
* **** * * *
consensus_6474#0 GTGTAAGGGTGCAACCGTGTACAGTAGGCTTGCACACGTGAGATCTGTCTATAGCGGTGT 480
consensus_6474#1 --GTAAGGGCAC-----CGGAAANNAGNT--------GNAAGGNGAATTTTTAAAGG-GT 59
******* * * * * ** * ** * * ** ** **
consensus_6474#0 AATAGCCTAATTGTGTATATATGTTAGCCCTGAAGCGTGTAGTTTTCCTCACCCAATACC 540
consensus_6474#1 ATAAANCNAATTGNGNA-ANAAGT-ANCCCNGAAGNG-GTAGTTT-CTTCACCCAANACN 115
* * * ***** * * * * ** * *** **** * ******* * ******** **
consensus_6474#0 TCGGTCGCCTTGGCGCGCAAATCTTTCTCTAGTT-AAAAGGCTGTTCTTAGTAATGGGAA 599
consensus_6474#1 TCGTTCCCNTGGGCGCGCAAATNTTTTTNTAGTTTAAAAGGCTGTTCTTAGTAATGGGAA 175
*** ** * * *********** *** * ***** *************************
consensus_6474#0 ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTNCATTGAG 659
consensus_6474#1 ATGGAAAGGAAATTTTGAGTGATGCTGGATTGCTGGTTGCTCCCTTTTTCCTCCATTGAG 235
**************************************************** *******
consensus_6474#0 TTCAGCTGGTGATGGCATTCTCGNTTCTGTCATCTGGCAGAGAANGCACTACTGGCCCAA 719
consensus_6474#1 TTCAGCTGGTGATGGCATTCTCGTTTCTGTCATCTGGCAGAGAAGGCACTACTGCCCCAA 295
*********************** ******************** ********* *****
consensus_6474#0 GTGACCCATGGCATAGCCAGAAACAGAATGCTNCATCAGTCCATCTGATGAGATATGTGT 779
consensus_6474#1 GTGACCCATGGCATAGCCAGAAACAGAATGCTCCATCAGTCCATCTGATGAGATATGTGT 355
******************************** ***************************
consensus_6474#0 GAANAAGGTTTCAACTGAGCTGATTATAGNGCTGTAAAGCGGCTTAGCACTATGTAAATC 839
consensus_6474#1 GAAGA-GGTTTCAGCTGAGCTGATTATAGTGCTGTAAAGCGGCTTAGCACTATGTAAATC 414
*** * ******* *************** ******************************
consensus_6474#0 ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 899
consensus_6474#1 ATGTGTTATGCACCATGTATCATGTATGATCCTTGGAAGTTCTGGATGCAAAAGTGAGTT 474
************************************************************
consensus_6474#0 GTGCACTTGCCATGTAAGTTCTCTATGATGAAAAAGGCCAAGTGTACTATTGTCTATGTA 959
consensus_6474#1 GTGCACTTGCCATGTAAA------AAAAAAAAAAA------------------------- 503
***************** * * *****
consensus_6474#0 TATCATTTCAGTTTTTGCATAACNNNNNNANAAA 993
consensus_6474#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||