cluster # 6475

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6475 cluster # 6475 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6475#0 length = 828 sequences # 2

consensus_6475#1 length = 267 sequences # 2

consensusID : consensus_6475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 828
fasta sequence

                              [CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGTCAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA]

[+] EMBL CB671629             [CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGTCAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA]
[+] EMBL CA766697             [                                                  TGCTGTCAGTCAATTACAGTCGAGCC CACAGATTATTTTGTTCAAATACGACCTAGACAAAAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAATTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACAGACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAATCCAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCATCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGnga        ]




>consensus_6475#0
CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGT
CAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTT
ACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAAT
CAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAG
ACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAA
ATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAAT
CAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCC
ATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCA
GATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGA
CAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAG
CTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCAC
GTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTC
AATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGC
ACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA

consensusID : consensus_6475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 267
fasta sequence

                              [AGCTTTAACTGTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTACTTACAGCCAAATTATGC]

[+] EMBL CF330617             [AGCTTTAACTGTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTACTTACAGCCAAATTATGC]
[+] EMBL AA750546             [                    TACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCA                       ]




>consensus_6475#1
AGCTTTAACTGTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTC
AAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTT
CCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGA
TCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATAC
TGCAAATTACTTACAGCCAAATTATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6475#0      CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGT 60
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      CAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTT 120
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      ACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAAT 180
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      CAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAG 240
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      ACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAA 300
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      ATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAAT 360
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      CAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCC 420
consensus_6475#1      --------------------------------------------------AGCTTTAACT 10
                                                                        ***     * 

consensus_6475#0      ATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCA 480
consensus_6475#1      GTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCA 70
                       *   ******  *  * *     *** ** **  *** ** *  ******** ******

consensus_6475#0      GATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGA 540
consensus_6475#1      GATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGA 130
                      **** **** ******* ******* *************** *********** ** ***

consensus_6475#0      CAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAG 600
consensus_6475#1      CGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGG 190
                      * ***************** ****************** ******************* *

consensus_6475#0      CTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCAC 660
consensus_6475#1      TTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTAC 250
                       ********** ********************** ************ ***** *** **

consensus_6475#0      GTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTC 720
consensus_6475#1      TTACAGCCAAATTATGC------------------------------------------- 267
                       * *** ***   * **                                           

consensus_6475#0      AATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGC 780
consensus_6475#1      ------------------------------------------------------------
                                                                                  

consensus_6475#0      ACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA 828
consensus_6475#1      ------------------------------------------------