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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence
[GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG]
[-] EMBL AK105588 [GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCAAAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCATGTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGCACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATT ]
[+] EMBL CB676401 [ GACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAAGCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACTTGCATG]
consensusID : consensus_6479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA]
[+] EMBL CB671630 [TCTTTTTTTGTTTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGCAAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACATAGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCGTAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTATAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCTAGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGGTTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGGAATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCCAAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCGCGTTGGCTGAGCGGGTGCTGTGGCTGGCACATTTTGGTATTCAACATTTAACGCAGAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACATTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACTTGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA]
consensusID : consensus_6479#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT]
[+] EMBL CF330618 [CCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAGGGCTCATCATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGATGGCACATTATTTTTCTTACTCTGACAGTATATGGGATGAATATCCCAACAACTGCCCCCCACCCAAAAAAAACCGAAACCACATTGATCCCTCTACTCGACATTCTGTTCTTGAAACTATGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6479#0 GCACTGGCACTTTTACTATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAGCA 60
consensus_6479#1 ------------------------------------------------------------
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 AAATTAAAGGGCTCATCATCCGCATGGAAGAATTTATCTCAAATAATTAAGACACTCCAT 120
consensus_6479#1 ------------------------------------------------------------
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 GTGATGGCACATCAGTGAGCTAGCTCTGACAGTATATGGTATGAATATCCCAGCAACTGC 180
consensus_6479#1 ------------------------------------------------------------
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 ACGCAACCAAAAAAAGACAGAAACAACATTGATCCCTCTACTCGACATTCTGTTCTTGAA 240
consensus_6479#1 ------------------------------------------------TCTTTTTTTGT- 11
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 GCTATGTTAACCCTACAAGGTAACTCTAGTCGGATGTACATTTTGTCTACAAGTTAGAGC 300
consensus_6479#1 ------TTAACCCTACAAGGTAACTCTAGTCGGATGTACTTTTTGTCTACAAGTTAGAGC 65
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 360
consensus_6479#1 AAGATACAATCATACAACAGTTTTACAGCATATACCAGATTAGATCATGAATTACAACAT 125
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 420
consensus_6479#1 AGTTCTAACAATAAGTACCAGACTTGGGCTTTCCTCTTTAGCATCTTAGCAGGTACATCG 185
consensus_6479#2 -------------------------------------------------CCGG--CATGA 9
* ** ***
consensus_6479#0 TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 480
consensus_6479#1 TAGTGCTGCACTTTTTTCCTTCTAGGGAAGTCACTTGGGAGGGAACCAACCACCATTGTA 245
consensus_6479#2 CAGTGTTTTTTTTTTTTTTTTTT-------TTTTTT------------TTTTTTTTTTTT 50
**** * ****** ** * * ** ** *
consensus_6479#0 TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 540
consensus_6479#1 TAGTTTATCTGACGGATTCGGTGCTGGGAGGCTGGCATGGTCGACTTGTGTAAAGTTTCT 305
consensus_6479#2 TTTTTTGCATCAAAAAATCAACATTGTTGCACTTGAATGCAC------TGGCACTTTTAC 104
* *** * * * ** ** ** * *** * ** * ***
consensus_6479#0 AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 600
consensus_6479#1 AGTATTGTCAAAAGAGGAACTAAAACAACTTGGTGAAGCAGAATAATCTGGTGATGGAGG 365
consensus_6479#2 TATCCCATCGAAACACAATTCAATACATGTTGGCCTTAAAAACAAAATTAAAG-----GG 159
* ** *** * * ** *** **** * * ** * * **
consensus_6479#0 TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 660
consensus_6479#1 TTTATTCAAGTCATGTTGAGGGAAGTATTGTTCAACAGCTGAAGTATCATCCAGAACAGG 425
consensus_6479#2 CTCATC---ATCCCCATGGAAAAATTTTTTTCAAATAATTAAAACACTCCATGTGAT-GG 215
* ** ** ** ** * ** * ** * * ** * * **
consensus_6479#0 AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 720
consensus_6479#1 AATGTCACCTCTAAGGGTCTTGAAGGCAAACTCAATGCATGGATCTGACCAGGAATTCCC 485
consensus_6479#2 CACATTATTTTTCTTACTCT-GACAGTATATGGGATGAATAT-CCCAACAACTGCCCCCC 273
* * * * * *** ** * * * *** ** * ** * ***
consensus_6479#0 AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 780
consensus_6479#1 AAATAGAGATGGCACAGCCAGCCCAGACGGATAGGAGGCTGCTTCAGGATGTGGAGCTCG 545
consensus_6479#2 ACCCAAAAAAAACCGAAACCACATTGATCCCTCT-ACTCGACATTCTGTTCTTGAAACTA 332
* * * * * * * * ** * * * * * * * * **
consensus_6479#0 CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 835
consensus_6479#1 CGTTGGCTGAGC--GGGTGCTGTGGCTGG---CACATTTTGGTATTCAACATTTAACGCA 600
consensus_6479#2 TGTTAACCCTACAAGGGAACTCTAGTCGGATGTACATTTT-------------------- 372
*** * * *** ** * * ** *******
consensus_6479#0 GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 895
consensus_6479#1 GAGCTCACAACAGGTTTTCCATCTGTTTGCATGGAAACCGGTAACTCCTGATTTGCAACA 660
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCCACT 955
consensus_6479#1 TTTCTCCAAAAGCTTGTGGCAGGTGCTTCTTCCGGCTCAGGAGTTAAAGAGAAACCAACT 720
consensus_6479#2 ------------------------------------------------------------
consensus_6479#0 TGCATG--------------------------------------- 961
consensus_6479#1 TGCATGATATTATTTTCAGCATAATTTGGCTGTAAGTAATTTGCA 765
consensus_6479#2 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||