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Oryza sativa
cluster # 648 cluster # 648       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_648#0 length = 702 sequences # 1  
consensus_648#1 length = 595 sequences # 1  

consensusID : consensus_648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG]

[+] EMBL AK108642             [ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATGGTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGAAGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAATTAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACATCTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG]


>consensus_648#0 ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATA TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG CACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGAC GACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATG GTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGA AGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAAT TAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACAT CTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG



consensusID : consensus_648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT]

[+] EMBL CA755236             [GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGATGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACTAAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT]


>consensus_648#1 GAGAGAGAAAGATCAAGAGCATATAATCTATATATACACACAGGCACGTCGCGAGTAAAT TTCACAAAACTACATAGACTACGTGGATCCGATACTCCGATCCCGACCCGGCCATGAGAA GGCAAGGAGGCAACTGCGAGGTCAACTCCTCCATCGCCCTCCTCCAGGAGAGGTTCAGGA ACCTGCAGAAGGTGAGGGAGATGAGGGAGGGGAGGGAGCAGCTGCTGCAGACGCCGCCGT CGCCGACGGCGACGGCGACGGCGATAGCCGGTGCAACTACCACTGGTGCTGCTGCGTCAT CGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCGCACCCGGAGCTGGTCCGGCCGTCGTCGA GGGCGGCGGCAGCACAGCGAGGCACCGCCGACGACGATGCTGCCGCCGTTCGTCAGCCGC CCGCGTTGAACGTTGGCAAGGCGCCAGCCATGGTTTTGCAGAGCTCGGGGTGTAAGACGA TGTGGAGGTGGACACTCGCTTCCCTTGGAAGAAGGGAAATTATTTAATGGTTGTAGAACT AAATGTTATTAACTCGGCGAATAATCATTTTTCCCCCTTTGACCTCCAGACTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_648#0      ATTACAATCAAGAGAGGAAAAAAAAACAGAGAGAGAAAGATCAAGAGCATATAATCTATA 60
consensus_648#1      ----------------------------GAGAGAGAAAGATCAAGAGCATATAATCTATA 32
                                                 ********************************

consensus_648#0      TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 120
consensus_648#1      TATACACACAGGCACGTCGCGAGTAAATTTCACAAAACTACATAGACTACGTGGATCCGA 92
                     ************************************************************

consensus_648#0      TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 180
consensus_648#1      TACTCCGATCCCGACCCGGCCATGAGAAGGCAAGGAGGCAACTGCGAGGTCAACTCCTCC 152
                     ************************************************************

consensus_648#0      ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 240
consensus_648#1      ATCGCCCTCCTCCAGGAGAGGTTCAGGAACCTGCAGAAGGTGAGGGAGATGAGGGAGGGG 212
                     ************************************************************

consensus_648#0      AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 300
consensus_648#1      AGGGAGCAGCTGCTGCAGACGCCGCCGTCGCCGACGGCGACGGCGACGGCGATAGCCGGT 272
                     ************************************************************

consensus_648#0      GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 360
consensus_648#1      GCAACTACCACTGGTGCTGCTGCGTCATCGTCCGGCGGCGAGCAGCCGAGGTGGTTCTCG 332
                     ************************************************************

consensus_648#0      CACCCGGAGCTGGTCCGGCCGTCGTCGAGGCCGGCGGCAGCACAGCGAGCCACCGCCGAC 420
consensus_648#1      CACCCGGAGCTGGTCCGGCCGTCGTCGAGGGCGGCGGCAGCACAGCGAGGCACCGCCGAC 392
                     ****************************** ****************** **********

consensus_648#0      GACGATGCTGCCGCCGTTCGTCAGCCGCCGGCGGTGAGCGTTGGCAGGGCGGCAGCCATG 480
consensus_648#1      GACGATGCTGCCGCCGTTCGTCAGCCGCCCGCGTTGAACGTTGGCAAGGCGCCAGCCATG 452
                     ***************************** *** *** ******** **** ********

consensus_648#0      GTTTTGCAGAGCTCGGGGTGTAGGAGCGATGTGGAGGTGGACACCTCGCTTCACTTGTGA 540
consensus_648#1      GTTTTGCAGAGCTCGGGGTGTAAGA-CGATGTGGAGGTGGACAC-TCGCTTCCCTTG-GA 509
                     ********************** ** ****************** ******* **** **

consensus_648#0      AGAAGTGAAAATTAAGTAGATAGCTAGTAGTAGCTAGATGCTTATTTAGCTCGGCCGAAT 600
consensus_648#1      AGAAG-GGAAATTATTTA-ATGGTT-GTAG-AACTAAATGTTA--TTAACTCGGC--GAA 561
                     ***** * ******  ** ** * * **** * *** *** *   *** ******   * 

consensus_648#0      TAATCATTTTTTCCCCCCTTTGATCCTTCTAGTTCTTGTTTTTCTCTTGATCGATCACAT 660
consensus_648#1      TAATCATTTTT--CCCCCTTTGA-CCTCCAGACTGGT----------------------- 595
                     ***********  ********** *** *    *  *                       

consensus_648#0      CTTGTATGCGCTCGTGGATGCTGTCGAATTTGAATTAATTTG 702
consensus_648#1      ------------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)