These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 865 fasta sequence [CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAGAAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGCCGCCGCCGGCGCCGGTGAAGAAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACCCTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTGGCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCGGCGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGCGTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATCGTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCGGCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGCTGTCTCGCTCGTCATGGTGTTCACGTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGTGTGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTTTGTTTGGTTGTTTTGTTTTTCTCTCGTAAGGTCTACAGATGTGACATGAAAGTTAATTTCTTGATGTCATCTTGGCTTGGAATCTATTACTAGTGGTGTCTGTCAAACTGTAATTGTATAGCATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGTTTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA] [+] EMBL AK107848 [CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAGAAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGCCGCCGCCGGCGCCGGTGAAGAAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACCCTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTGGCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCGGCGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGCGTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATCGTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCGGCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGCTGTCTCGCTCGTCATGGTGTTCACGTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGTGTGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTTTGTTTGGTTGTTTTGTTTTTCTCTCGTAAGGTCTACAGATGTGACATGAAAGTTAATTTCTTGATGTCATCTTGGCTTGGAATCTATTACTAGTGGTGTCTGTCAAACTGTAATTGTATAGCATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGTTTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA] consensusID : consensus_6481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 851 fasta sequence [ATTGCCAAATATCTCGCTATCAGCTATGGACATGGGAGGGCACGACATGGGCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCATGAAGTCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACCATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTGGCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCGCGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGCGTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCCGTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCCCCGCGCAGGTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTAGCCGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTTGATGCTTGCATGTGTTTGTGTAATTGTGTATATTGTTCGCGGTCGGTTGGATGAGTTGTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAAAGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTGCCGTGAAACTGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAAA] [+] EMBL CB661145 [ATTGCCAAATATCTCGCTATCAGCTATGGACATGGGAGGGCACGACATGGGCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCATGAAGTCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACCATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTGGCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCGCGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGCGTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCCGTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCCCCGCGCAGGTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTAGCCGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTTGATGCTTGCATGTGTTTGTGTAATTGTGTATATTGTTCGCGGTCGGTTGGATGAGTTGTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAAAGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTGCCGTGAAACTGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATA ] [+] EMBL CF330642 [ CGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAA ] [-] EMBL CF330641 [ GTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAATTTCAATTCTAATAAATTGATTATGGTGCGCTTATGTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6481#0 CCCATAGAGAGCAACATCGACATAAACTATCATCAGCTAGCTGCGACAGCGAGCTAGTAG 60 consensus_6481#1 ---ATTGCCAAATATCTCGCTATCAGCTATGGACA------TGGGAGGGCACGACA-TGG 50 ** * * * *** ** * **** ** ** ** ** * * * * consensus_6481#0 AAGCCATGGACATGGGCGGCAATGGCATGGCGATGCCGC-CGCCGCCGGCGCCGGTGAAG 119 consensus_6481#1 GCGGCATGTCCCCGCCGGCGGCCGGGGCGGCGGCGCAGGGCGGCATGGGCGCCA-TGAAG 109 * **** * * * ** **** ** * ** * ****** ***** consensus_6481#0 AAGGCGCGGTACATGCACATGACCTTCTTCTGGGGCAAGAACACGGAGGTGCTCTTCACC 179 consensus_6481#1 TCGATGAGGTACACGCACATGACCTTCTTCTGGGGCAAGAACTCGGAGGTGCTCTTCACC 169 * * ****** **************************** ***************** consensus_6481#0 CTGTGGCCGGGCGCCAGGGGCGGCATGTACGCGCTCGCGATCCTCTTCATGTTCGCGCTG 239 consensus_6481#1 ATGTGGCCCGGCACGAGGGGGGGCATGTACGCGCTGGCGCTCATCTTCGTCTTCGCGCTG 229 ******* *** * ***** ************** *** ** ***** * ********* consensus_6481#0 GCCGTGCTCCTCGAGTTCCGCGGCTACCGCGTGCTGGAGGCGCGCCTCGCCCG------G 293 consensus_6481#1 GCCGTCATCGTCGAGTTCCTCGGCAGCCGCAGGGCGGACGCCTGCCTCGCCGCACTGGCG 289 ***** ** ********* **** **** * *** ** ******** * consensus_6481#0 CGGCGCGCGCCGCGGGCGGCCGCGGCGCTGCGCACGGCCGTCCACGCCGTGCGCGTCGGC 353 consensus_6481#1 CGGCGCGCCCCGGCGGCGGGCGGGCTCGCGCGCGCGGCCGTGCACACGGTGCGCGTCGGC 349 ******** *** ***** ** * **** ******* *** * ************ consensus_6481#0 GTCGCATACCTCATCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGCGATC 413 consensus_6481#1 GTGGCGTACCTGCTCATGCTCGCGCTCATGTCGTTCAACGGCGGGGTGTTCCTCGTGGCC 409 ** ** ***** ****************************************** * * consensus_6481#0 GTGGCGGGGCACGCCGCCGGCTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGCGGGCCG 473 consensus_6481#1 GTTGCCGGCCACGCCGCGGGGTTCCTGGCGTTCCGCGCCGGCCTGTGCGGCGGC---CCC 466 ** ** ** ******** ** ********************************* ** consensus_6481#0 GCGCCGCCGCTGGAGGAGGACCGCAAGAACGACCCCGTGTGCTGCTAGTATGGCTTAAGC 533 consensus_6481#1 GCGCAG---GTGGAGGAGGACCGCAAGAACGACCCGGCCTGCTGCTAGTA--------GC 515 **** * ************************* * *********** ** consensus_6481#0 TGTCTCGCTCGTCATGGTGTTCAC-GTGGCCTTTTCGCTTAATTTGTTGATGTTTTGTGT 592 consensus_6481#1 CGCCTCGTCGACGTTGGTGTGTACTGTGAGCGATCGATTCGGTTCGGTGGACGTTGGTTT 575 * **** ****** ** *** * * * ** * ** ** ** * consensus_6481#0 G-TGCGCATATAGGTTTCAGGTGATTGAAATCTTTGAAATTTGGGTCGGATGATCGAGTT 651 consensus_6481#1 GATGCTTGCATGTGTTT-GTGTAATTGTGTATATTGT--TCGCGGTCGGTTGGATGAGTT 632 * *** ** **** ** **** *** * ****** ** ***** consensus_6481#0 TGTTTGGTTGTTTTGTTTTTCTCT-------CGTAAGGTCTACAGATGTGACATGAAAGT 704 consensus_6481#1 -GTTTGGCTGGTTTTCTTTCGTCTGTATCATTGTATGGCTCAAAAACGTGACATGAAAA- 690 ****** ** *** *** *** *** ** * * * *********** consensus_6481#0 TAATTTCTTGATG--TCATCTT--GGCTTGGAATCT-ATTACTAGTGGTGTCTGTCAAAC 759 consensus_6481#1 -AGGCTCCTGATGGTCCATCTCTCAAGTTGAAATCTGAAAAGTTCCGGTG-CCGTGAAAC 748 * ** ***** ***** *** ***** * * * **** * ** **** consensus_6481#0 TGTAATTGTATAGC-----ATATGTCACTCATTTGATTGATGCTGCCTCCCGGCTTTAGT 814 consensus_6481#1 TGTAATCGTGCAATCCGCTATCTATCACTTGTTTCATTGATGATTCACCCTGGCTGTAAT 808 ****** ** * ** * ***** *** ******* * * ** **** ** * consensus_6481#0 TTCAATTGTCTCAGATTGGTTATTATAGTGTACCTGCAAAACTGTTCTTCA 865 consensus_6481#1 TTCAATTCTAATAAATTGATTATGGT-GCGCTTATGTAAAAAAA------- 851 ******* * * **** **** * * * ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||