cluster # 6484

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Oryza sativa
cluster # 6484 cluster # 6484 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6484#0 length = 220 sequences # 1
consensus_6484#1 length = 149 sequences # 1

consensus_6484#2 length = 121 sequences # 1
consensus_6484#3 length = 117 sequences # 1

consensusID : consensus_6484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [CATTCCCATCACAACCATACGCAGCCTGGCAAGCCATACACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTGCAGCTCAACTCNACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCCCAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTTG]

[+] EMBL CB965657             [CATTCCCATCACAACCATACGCAGCCTGGCAAGCCATACACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTGCAGCTCAACTCNACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCCCAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTTG]




>consensus_6484#0
CATTCCCATCACAACCATACGCAGCCTGGCAAGCCATACACAGTGTCAACAGCCTGGTGG
TTGCCTCAATGCAGTGCAGCTCAACTCNACCATTCAATTTGCTGTTTGCTGCTCCACTTG
CCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCCCAGCATGCCATTCAATTGCAA
TCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTTG

consensusID : consensus_6484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTACGTGGCAACACATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGCTGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT]

[+] EMBL BU673877             [CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTACGTGGCAACACATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGCTGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT]




>consensus_6484#1
CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTACGTG
GCAACACATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGCTGCT
GGTGGCAGCAGGCTGGTATTTGCGTTCAT

consensusID : consensus_6484#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 121
fasta sequence

                              [TTCATCCTGCTCCACAATTCCCACCACCAACATCACGCAGCCTGGCAAGCCATCAACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTTGCAGCTCAACTCGACCATTCAATTTGCTG]

[+] EMBL CB965699             [TTCATCCTGCTCCACAATTCCCACCACCAACATCACGCAGCCTGGCAAGCCATCAACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTTGCAGCTCAACTCGACCATTCAATTTGCTG]




>consensus_6484#2
TTCATCCTGCTCCACAATTCCCACCACCAACATCACGCAGCCTGGCAAGCCATCAACAGT
GTCAACAGCCTGGTGGTTGCCTCAATGCAGTTGCAGCTCAACTCGACCATTCAATTTGCT
G

consensusID : consensus_6484#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [CATACGCAGCCTGGCAAGCCATCAAAGTTGTCAACGCCATGGGTGTGCACTCAATGCAGTGCAGCTCAACTCACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC]

[+] EMBL CB965193             [CATACGCAGCCTGGCAAGCCATCAAAGTTGTCAACGCCATGGGTGTGCACTCAATGCAGTGCAGCTCAACTCACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC]




>consensus_6484#3
CATACGCAGCCTGGCAAGCCATCAAAGTTGTCAACGCCATGGGTGTGCACTCAATGCAGT
GCAGCTCAACTCACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6484#2      TTCATCCTGCTCCACAATTCCCACCACCAACATC--ACGCAGCCTGGCAAGCCATCAACA 58
consensus_6484#3      ------------------------------CAT---ACGCAGCCTGGCAAGCCATCAAAG 27
consensus_6484#0      ---------------CATTCCCATCACAACCAT---ACGCAGCCTGGCAAGCCATACACA 42
consensus_6484#1      -CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTA--C 57
                                                          **    ****     ***      

consensus_6484#2      GTGTCAACAGCCTGGTGGTTGCCTCA-ATGCAGTTGCAGCTCAACTCGACCATTCAAT-T 116
consensus_6484#3      TTGTCAACGCCATGGGTGTGCACTCA-ATGCAGT-GCAGCTCAACTC-ACCATTCAAT-T 83
consensus_6484#0      GTGTCAACAGCCTGGTGGTTGCCTCA-ATGCAGT-GCAGCTCAACTCNACCATTCAAT-T 99
consensus_6484#1      GTGGCAACA-CATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGC 116
                       ** ****  * **   **   *    ****  *   *   ***      *   ** *  

consensus_6484#2      TGCTG------------------------------------------------------- 121
consensus_6484#3      TGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC-------------------------- 117
consensus_6484#0      TGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCC 159
consensus_6484#1      TGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT--------------------------- 149
                      *****                                                       

consensus_6484#2      ------------------------------------------------------------
consensus_6484#3      ------------------------------------------------------------
consensus_6484#0      CAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTT 219
consensus_6484#1      ------------------------------------------------------------
                                                                                  

consensus_6484#2      -
consensus_6484#3      -
consensus_6484#0      G 220
consensus_6484#1      -