cluster # 6489

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6489 cluster # 6489 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6489#0 length = 1060 sequences # 3

consensus_6489#1 length = 620 sequences # 1

consensusID : consensus_6489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1060
fasta sequence

                              [TGAGGTCGATGTGGAATACAAACTGCAAGATACAAAAAAGCTTGCCAAGGAGTGGGAAATGAAGGTGAAGGCATTCAGGATAAAGCTTGATGACATTCAGACAAATCTTGTTAAACACATGGATCAAATTCAAAAGGATGCTATTGATCATGAGAAACTGAAAGAAACATTGAGTGACGAGCAATTCAATGAGGCGTGTGACATGAGAAAAGCAGTTGAGATGGTGGCACTGTTGGAAGCCCTGCTTAAAGACTTGAGTCCTAACCTGGATTCAATAGCAGAGTACCGCACAAAGGCTCGTGTATATGGTGAACGCGTTGATGAGCTAAATGCCACCACTCAGGAGCGTGATGATCTTAAAAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACATAATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCACCAAGAGTATAACCATCAATCCCGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTAATCTGTTGTCTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTAGAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTTAACGTAAGGTATGTGATCACATGCCCCAGCTGAACACAAC]

[+] EMBL AK064293             [TGAGGTCGATGTGGAATACAAACTGCAAGATACAAAAAAGCTTGCCAAGGAGTGGGAAATGAAGGTGAAGGCATTCAGGATAAAGCTTGATGACATTCAGACAAATCTTGTTAAACACATGGATCAAATTCAAAAGGATGCTATTGATCATGAGAAACTGAAAGAAACATTGAGTGACGAGCAATTCAATGAGGCGTGTGACATGAGAAAAGCAGTTGAGATGGTGGCACTGTTGGAAGCCCTGCTTAAAGACTTGAGTCCTAACCTGGATTCAATAGCAGAGTACCGCACAAAGGCTCGTGTATATGGTGAACGCGTTGATGAGCTAAATGCCACCACTCAGGAGCGTGATGATCTTAAAAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACATAATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCACCAAGAGTATAACCATCAATCCCGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTAATCTGTTGTCTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTAGAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTTAACGTAAGGTATGTGATCACATGCCCCAGCTGAACACAAC]
[+] EMBL CA999205             [                                                                                                                                                                                                                                                                                                                       AACGCGTTGATGAGCTAAATGCCACCACTCAGGAGCGTGATGATCTTAAAAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACATAATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCACCAAGAGTATAACCATCAATCCCGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTAATCTGTTGTCTGCGTGGT                                                                                                                                              ]
[+] EMBL CB000063             [                                                                                                                                                                                                                                                                                                                                                                      AAAAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACATAATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTTTATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCACTCTCAGAAACAACATGTTTGAACTAGCTGATAGGC                                                                                                                                                                                                                                                                                      ]




>consensus_6489#0
TGAGGTCGATGTGGAATACAAACTGCAAGATACAAAAAAGCTTGCCAAGGAGTGGGAAAT
GAAGGTGAAGGCATTCAGGATAAAGCTTGATGACATTCAGACAAATCTTGTTAAACACAT
GGATCAAATTCAAAAGGATGCTATTGATCATGAGAAACTGAAAGAAACATTGAGTGACGA
GCAATTCAATGAGGCGTGTGACATGAGAAAAGCAGTTGAGATGGTGGCACTGTTGGAAGC
CCTGCTTAAAGACTTGAGTCCTAACCTGGATTCAATAGCAGAGTACCGCACAAAGGCTCG
TGTATATGGTGAACGCGTTGATGAGCTAAATGCCACCACTCAGGAGCGTGATGATCTTAA
AAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACAT
AATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCT
GGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCC
CAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACT
AGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGAT
AGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGAC
CAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAG
GCTGGTTGGCATCTACAAGACGGATAATTGCACCAAGAGTATAACCATCAATCCCGGAAG
CTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTA
ATCTGTTGTCTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTA
GAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTT
AACGTAAGGTATGTGATCACATGCCCCAGCTGAACACAAC

consensusID : consensus_6489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [AGACGAGACAAGGGGGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTTTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCGCCAAGAGTATAACCATCAATCCCGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTAATCTGTTGTTTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTAGAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTTAAAAAAAAAAAAAA]

[-] EMBL CA763237             [AGACGAGACAAGGGGGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGATAGATGCTGCGTTGGACTTTAAGAATGTTTCCATCGTTGGACATTACGTGAAAGACCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCGCCAAGAGTATAACCATCAATCCCGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTAATCTGTTGTTTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTAGAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTTAAAAAAAAAAAAAA]




>consensus_6489#1
AGACGAGACAAGGGGGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGC
TGAGCTGGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAG
ACCTCCCAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAG
CTCACTAGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGA
TGAGATAGATGCTGCGTTGGACTTTAAGAATGTTTCCATCGTTGGACATTACGTGAAAGA
CCGGACCAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGC
TGATAGGCTGGTTGGCATCTACAAGACGGATAATTGCGCCAAGAGTATAACCATCAATCC
CGGAAGCTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTA
GATGTAATCTGTTGTTTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCT
TTTGTAGAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACA
TTTGTTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6489#0      TGAGGTCGATGTGGAATACAAACTGCAAGATACAAAAAAGCTTGCCAAGGAGTGGGAAAT 60
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      GAAGGTGAAGGCATTCAGGATAAAGCTTGATGACATTCAGACAAATCTTGTTAAACACAT 120
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      GGATCAAATTCAAAAGGATGCTATTGATCATGAGAAACTGAAAGAAACATTGAGTGACGA 180
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      GCAATTCAATGAGGCGTGTGACATGAGAAAAGCAGTTGAGATGGTGGCACTGTTGGAAGC 240
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      CCTGCTTAAAGACTTGAGTCCTAACCTGGATTCAATAGCAGAGTACCGCACAAAGGCTCG 300
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      TGTATATGGTGAACGCGTTGATGAGCTAAATGCCACCACTCAGGAGCGTGATGATCTTAA 360
consensus_6489#1      ------------------------------------------------------------
                                                                                  

consensus_6489#0      AAAGCAATACGATGCATTGAGGAAGAGAAGGTTAGATGAGTTCATGGCAGGATTCAACAT 420
consensus_6489#1      ------------------------------------------------------AGACGA 6
                                                                              **  

consensus_6489#0      AATATCTTTGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCT 480
consensus_6489#1      GACAAGGGGGAAACTGAAGGAGATGTACCAGATGATTACGCTTGGAGGTGATGCTGAGCT 66
                       * *     ***************************************************

consensus_6489#0      GGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCC 540
consensus_6489#1      GGAACTTGTTGATTCCTTGGACCCGTTTTCAGAAGGTGTTGTTTTCAGTGTTAGACCTCC 126
                      ************************************************************

consensus_6489#0      CAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACT 600
consensus_6489#1      CAAGAAAAGCTGGAAAAACATTGCCAATTTATCTGGTGGCGAAAAGACGCTTAGCTCACT 186
                      ************************************************************

consensus_6489#0      AGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGAT 660
consensus_6489#1      AGCTCTGGTGTTTGCTCTTCACCATTATAAACCAACTCCTTTATATGTTATGGATGAGAT 246
                      ************************************************************

consensus_6489#0      AGATGCTGCGTTGGACTTTAAGAATGTCTCCATCGTTGGACATTACGTGAAAGACCGGAC 720
consensus_6489#1      AGATGCTGCGTTGGACTTTAAGAATGTTTCCATCGTTGGACATTACGTGAAAGACCGGAC 306
                      *************************** ********************************

consensus_6489#0      CAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAG 780
consensus_6489#1      CAAAGATGCTCAGTTCATTATTATCAGTCTCAGAAACAACATGTTTGAACTAGCTGATAG 366
                      ************************************************************

consensus_6489#0      GCTGGTTGGCATCTACAAGACGGATAATTGCACCAAGAGTATAACCATCAATCCCGGAAG 840
consensus_6489#1      GCTGGTTGGCATCTACAAGACGGATAATTGCGCCAAGAGTATAACCATCAATCCCGGAAG 426
                      ******************************* ****************************

consensus_6489#0      CTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTA 900
consensus_6489#1      CTTTGCGGAGAGCATGAAGGTAGTTTAGTGTTTGTGCTACGGAAGTTTGAGTTAGATGTA 486
                      ************************************************************

consensus_6489#0      ATCTGTTGTCTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTA 960
consensus_6489#1      ATCTGTTGTTTGCGTGGTGCCAGCATGGAACCGAGGTTCCTTCGGTATCAAGCTTTTGTA 546
                      ********* **************************************************

consensus_6489#0      GAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTT 1020
consensus_6489#1      GAACAAATTGATTTAGAATTGTGCGTGTATAGTGATGAACGAGACCAAAGGACATTTGTT 606
                      ************************************************************

consensus_6489#0      AACGTAAGGTATGTGATCACATGCCCCAGCTGAACACAAC 1060
consensus_6489#1      AAAAAAAAAAAAAA-------------------------- 620
                      **   **   *