These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTGAATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTACATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACTGTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGAAACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA] [+] EMBL BI811806 [TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTGAATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTACATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACTGTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGAAACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA] consensusID : consensus_650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCAAATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTACATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC] [-] EMBL AU225400 [CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTAGCCATCTGAAAATCAAATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTACATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAGCATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_650#0 TGGTTGAGATGTTACTAGAATTGCGTATACCATATAGTGCTCTAGCTTCCTGTGAATTTG 60 consensus_650#1 ----------------------CCGCTAGCGGCCGCGAATTCGCGGCCGCTGTGAATTTG 38 ** * * ** * *********** consensus_650#0 AATCCAAATGGAAGAACATCTCCCGGAAAATGGCACGCCAAAGGAGTGAACCTAGCATGA 120 consensus_650#1 AATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGA 98 **** ********************************* ********************* consensus_650#0 CCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTA 180 consensus_650#1 CCTCATTGCTGCAGCATCGAGATATGGCATTGAGCAGAGTGAAAAACGATCTGGCCTGTA 158 ************************************************************ consensus_650#0 GCCATCTGAAAATCACAATGGCACTCAAGTTGAAGTTATTTCTCCCATGTTGGTATGTAC 240 consensus_650#1 GCCATCTGAAAATCA-AATGGCACTCAAGTTGAAGTTATTTCTCTCATGTTGGTATGTAC 217 *************** **************************** *************** consensus_650#0 ATGCATTTAAAACTATGCCAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAG 300 consensus_650#1 ATGCATTTAAAACTATGCAAAAAGTCACCTGTTACTTTGTAATTTGTGAGTGTGCTTCAG 277 ****************** ***************************************** consensus_650#0 CATAGGCTTTTCAAATTCCATATTTATGTTTGAAAATCACTTGTCTTCAAGCTCAACACT 360 consensus_650#1 CATAGGCTTTTCAAATTCCATATTTATGTTTGAGCGGC---------------------- 315 ********************************* * consensus_650#0 GTTATCTCGCAGAATGATGAAGCTGGTTGTTGTATTTGTTTATTTAAGATTAAGATATGA 420 consensus_650#1 ------------------------------------------------------------ consensus_650#0 AACCTTGAAAATTAAGGGTCCGGTGCTTTGCCAAAAAAAAAA 462 consensus_650#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||