|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1387 fasta sequence
[TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA]
[+] EMBL CB645569 [TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGCGGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTCGCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGCGGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGAGGTTATTGGTGATCTTCGCAGAAGTTATCCTTCTTTGACATTTGGGGTTGGCACGGTCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTCCTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTAATGGGTGGGGAGGTCTATATGCTTGCTTTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGAACATGGGCACC ]
[-] EMBL CB645570 [ TTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTTATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGGACGGCCTCAGTCA]
consensusID : consensus_6501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence
[CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA]
[+] EMBL CF331491 [CTTCATAATGAATTTAATTTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACACTACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATTGTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAATCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCAT ]
[-] EMBL CF331490 [ GTATTTGTGTAAGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAGGAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGGTCTACCCAGTTTCAGTGATGGGTGGG GAGGTCTATATGCTTGCATTGAAGAAACCATTTCCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTGGAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGAGAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTTTACGGGCATCGCAATCAGGAAC ATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACACAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6501#0 TGTTGCCCTCGAAGCCCACGCGCCAGCGAGCACGGCCCGGCCTCGCCGTCGCCGGCGAGC 60
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 GGCCGCGCCGCCATCGCGGAAGACGCCCGAGTCGCAGGCGCTCCGCTCCATACTCCACTC 120
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 GCGCGTCATTGCCTGCCTCCGCGCACAAGACGGGGAGACGGCGATGCAGGCGGCCCGTGC 180
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 GGCCGTGCGCGGCGGCGTCTCCGTGCTAGAGATTGTGATGTCCACCCCTGGAGCGCTGGA 240
consensus_6501#1 ---------------------------------------------CTTCATAATGAATTT 15
* * *
consensus_6501#0 GGTTATTGGTGATCTTCGCAGAAGTT--ATCCTT-CTTTGACATTTGGGGTTGG-CACGG 296
consensus_6501#1 AAT--TTGGCAAGTTTGATCCAATTTCAGTCTGTGCTTTGATGTACTTAGTGGGACACAC 73
* **** * ** ** ** ** * ****** * ** ** ***
consensus_6501#0 TCTTGAATCCTGAAGATGCAAGGAAAGCCATTACAGCTGGTGCACAGTTTCTCATGAGTC 356
consensus_6501#1 TACTTAATACTTGCATATTATCATTATACATCTAAGCTGATTGATTCTTGCATATT-GTA 132
* * *** ** * * *** ***** * * ** * ** **
consensus_6501#0 CTGGTACAGTCATGGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 416
consensus_6501#1 TTTGTGTAA----GGAAATACTTCATGCTCTTAAAGAAAGTGAAGTCCTGTGTATTCCAG 188
* ** * ***********************************************
consensus_6501#0 GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 476
consensus_6501#1 GAGTGCTGACACCAACTGAAGTTATATCTGCTTCCAATGCTGGAGCAGAAGTCGTTAAGG 248
************************************************************
consensus_6501#0 TCTACCCAGTTTCAGTAATGGGTGGGG-AGGTCTATATGCTTGCTTTGAAGAAACCATTT 535
consensus_6501#1 TCTACCCAGTTTCAGTGATGGGTGGGNGAGGTCTATATGCTTGCATTGAAGAAACCATTT 308
**************** ********* **************** ***************
consensus_6501#0 CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 595
consensus_6501#1 CCTTTTCTACCAATGGTCGCTTCTCAAGGAATAAGCATAGACTCAATCAAGGGGTATTTG 368
************************************************************
consensus_6501#0 GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 655
consensus_6501#1 GAGGCAGGGGCATCTGCAGTGGTGCTATCTGATGCTATTTTCGACAAAGAATTGATGAGA 428
************************************************************
consensus_6501#0 GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 715
consensus_6501#1 GAAAGGAAATTTGATGAAATTTCAGAACTTGCAAACCTGGCCACTCTACGGGCATCGCAA 488
************************************************************
consensus_6501#0 TCAGGAACA-TGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 774
consensus_6501#1 TCAGGAACAATGAGGCAAATATGACAAAAATTTTAGCATTATGTTCCATTAAGAAGAACA 548
********* **************************************************
consensus_6501#0 CAATATTAGTAGTCTCCTAATGCGAACATGGGCACCCATTTTGCTCGGTATGATTGAGCC 834
consensus_6501#1 CAATATTAGTAGTCTCCTAATGCGACAATGGGCACCCATTTTGCTCGGTATGATTGAGCC 608
************************* *********************************
consensus_6501#0 ATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGATCTGCATGA 894
consensus_6501#1 ATGATGAGCAGTTGTTTTTCCCGGCAAAAAAAAAAA------------------------ 644
************************** * *
consensus_6501#0 GGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTA 954
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 GAGAAGTAATCAAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGG 1014
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 TGGTCTGGCAAAGAAGTGATATAAAATCTCCGAGCTAGCTACGACAAGTGCTGAGTCCAT 1074
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 ATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAAATGGAAGCA 1134
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 CCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTT 1194
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 ACAGATCGTGGCACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATA 1254
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 CTCTCTAATAGAACAGGTACTGTTGTCTCTATAGCTTGTGTAAATACTCCATCTAATGTT 1314
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 ATAAGGAACAATTTTACTTGATGCATGTCCTAGGGAGGCAACTCCTGTAAAACTAAAGGG 1374
consensus_6501#1 ------------------------------------------------------------
consensus_6501#0 ACGGCCTCAGTCA 1387
consensus_6501#1 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||