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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2411 fasta sequence
[ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCGGCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGGCTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCGGGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTGGAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATATGATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATTTTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATGTTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAAGGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTGCACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACCCTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTGTAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTTTGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGGAAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAGCACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCACATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGAACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTGAAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTGCAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACCACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTTTTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGATGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAGCCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCATTTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATGAAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAATGTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTATTTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCATATATGTGCTAAGAACCTAACACTTCTTTCGGCTTACTCTTATTCAAGTTATCCTTTCTGATATGTTATCTTCCATGTTTCTCAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGATCATATTGTCTGGTTTCTATAA]
[+] EMBL AK070658 [ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCGGCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGGCTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCGGGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTGGAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATATGATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATTTTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATGTTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAAGGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTGCACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACCCTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTGTAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTTTGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGGAAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAGCACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCACATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGAACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTGAAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTGCAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACCACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTTTTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGATGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAGCCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCATTTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATGAAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAATGTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTATTTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCATATATGTGCTAAGAACCTAACACTTCTTTCGGCTTACTCTTATTCAAGTTATCCTTTCTGATATGTTATCTTCCATGTTTCTCAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGATCATATTGTCTGGTTTCTATAA]
[+] EMBL C98957 [ CCAAGNG AGGGATCCG TGTTGAATGAAA TTTACTNCTNCATAACCAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGA TTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTAaaaaaaa ]
consensusID : consensus_6505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence
[TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAG]
[+] EMBL AU064206 [TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATGAAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAG]
[+] EMBL AU163643 [TACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCCTGGCTCTGGAACGAGACCTCTCCCCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAA CTCTGGTTTCGGATGAAGGATGA GTCGTACAAG ACTCCAAGAG AGGGA TCCATGTTG ATG AATTTT CTTCTACATt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6505#0 ACATAGTTGCTCACCGGTTTCAGTTGAAAAGAAGGGGAGAAAATAAAAAGCTCACCGGCG 60
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GCTTCTCTCCTCTCGCCGGTCGACGGCGCGATGCTGCGCGGATTCCCTCAGGCCCGGAGG 120
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CTCCTCAGGTGATCTCCATCTCCCCTTGTTCTTCTTCTTGTCCTGCGCAACCGATGGGCG 180
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GGTTCTTGATGCGCCGTCGCTCTGGGTATGGGGGGTTTTGGTTTCAGGAGGATGGGGTTG 240
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GAGAAGGAAGACGCCTACTTCTGGAAGCAGATGGGCAAGGGCATGCTCTGCACCTACGCG 300
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CTCTTCGGCGCCGCCTGGCTCTGGAACGAGGCCTCTCCCCTCGGCTGGTGGACGCTCAAG 360
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CCGCGCCCCAAGGTAATCTCTTCTTGTAGTTAGGGTCTAGGGATGCATATCTGAAGATAT 420
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GATTTAACTGGAACCAAGCCTATACAATCAGTTTCTTGGGGGGTTTTCTTTTTCAGAATT 480
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTTGAATACAGATAACTCTGAGCATGGAGGATTAGGTATTTTGCAGATGTTTCTGTAATG 540
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTGATTGCACAATCGACCAGCATATTTTCCTTAGTGATGTATGATGACAGTTTTATACAA 600
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GGAGGGCCTGTAAATTCTCATTTGGTTATAATATTTACTGTTGATAAAAACAGTGAGTTG 660
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CACTGAAAAATATGCGACATCATTGGGAGTCCAATTAATTGATAACGAGAAGGAAAAACC 720
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CTAAGCATAATGCTGATCCTGCAGTTTATCTATGAAAACTTTGGCAGCCTTTTTGATCTG 780
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TAAAGACGACGTAGAAGTTGACCGTGCAGTGTTGTTAATTCTGACATTCCTCTCACAGTT 840
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TGTTTTCCTATCTCCTATACATCTTAATAGTGTTGTTGAATCTTTCATCTTATGTTTAGG 900
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 AAATTTCTAAATCTTATTTACTCTGTTGAAAGAAGTACCGTAAGCACATTGAGATATTAG 960
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CACATTACTGTTGATTAGGGAAGCTTATTTATTTGAATTTATTATCTTAGGTAGAACTCA 1020
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CATAGTCGCACCGATATCCCCTGTCTGATTCTTCTTGCATAATACTAGTTGGGTGTGAGA 1080
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 ACTCTGAAATGAGATTAATTAATAGCATGTGTATATTTTTCAAATTAAAACTGAACTCTG 1140
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 AAATCTGACAAGGTGGAAACGAACTGATGTGGCATTTTGTTTTATTGTAAGATATATGTG 1200
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CAGAGAAATAAATTCATCCTGTTTTTATACCCAATTACTGAAACATCTTGGTTAAGGACC 1260
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 ACCAGTAGCTAATGCCAATTCATCCTGATTCTGAACTCTAGTCAAGTATTCATCTTTCTT 1320
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTAAGAAGTCACTGTTGATTTTGGCAAATCAATTGATGAGAAGCATGTTCTGTATTTTGA 1380
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TGGTATGCTATTCAATGAATTTTCTGGCTGGCTGGATGCATGAAACATAGCATACGGTAG 1440
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CCTCCTAATCGTCCATATGCCACATTATACTTTACTGAACCAACAATTATAGATCTTCAT 1500
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTGCAATTCCTAAGCACCTCTGATATGTATCGCCTATATCCATCTCAATTCCCAACCATG 1560
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 AAATGGTAGGATGAAACATAAGTGCATAAACATTAGAATGATATATCTTTTTAAAAAAAT 1620
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GTATTATAGTTGTGTAGAAACAAATAGTTTGCCATTGAGATCTCAGAAAGATATAGGTAT 1680
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTTTGTTACCACGTGAGCTAAAGCTCTTTTGAAACATTGTGGCTAACAGCCTATGGCCAT 1740
consensus_6505#1 -------------------------------------TACTTCTGGAAGCAGATGGGCAA 23
* ** *** **** **
consensus_6505#0 ATATGTGCTAAGAACCTA-ACACTTCTT----TCGGCTTACTCTTATTCAAGTTATCCTT 1795
consensus_6505#1 GGGCATGCTCTGCACCTACGCGCTCTTCGGCGCCGCNTGGNTCTGGAACGAGACCTCTCC 83
**** * ***** * ** * ** * *** * ** **
consensus_6505#0 TCT-GATATGTTATCTTCCATGTTTCTC----AGGAAGAAAGAGAAATGGCCCACCTTTA 1850
consensus_6505#1 CCTCGGCTGGTGGACGCTCAAGCCGCGCCCCAAGGAAGAAAGAGAAATGGCCCACCTTTA 143
** * ** * ** * * * ****************************
consensus_6505#0 CGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAG 1910
consensus_6505#1 CGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAG 203
************************************************************
consensus_6505#0 TGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTC 1970
consensus_6505#1 TGGAGGTGCTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTC 263
************************************************************
consensus_6505#0 TGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTG 2030
consensus_6505#1 TGATAACATGCAGAAACAATTGCAGTCAAAAAAGTTTGACCAAGAAGCACAGAAGCTCTG 323
************************************************************
consensus_6505#0 GTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATG 2090
consensus_6505#1 GTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATTCGATGTTGAATG 383
************************************************************
consensus_6505#0 AAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCA 2150
consensus_6505#1 AAATTTTACTTCTACATAAACAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCA 443
************************************************************
consensus_6505#0 GCTTGTTAGCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTA 2210
consensus_6505#1 G----------------------------------------------------------- 444
*
consensus_6505#0 CTTTGCAATCTGGAGATTTTTTTTTTTTAATTTGAGAAAGCAATCTGGAGAATCTAGAGA 2270
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 GTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCATCAGTTACAGATT 2330
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 TTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAAGAT 2390
consensus_6505#1 ------------------------------------------------------------
consensus_6505#0 CATATTGTCTGGTTTCTATAA 2411
consensus_6505#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||