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Oryza sativa
cluster # 6513 cluster # 6513       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6513#0 length = 1374 sequences # 4  

consensusID : consensus_6513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1374
fasta sequence
                              [CTCCGCGCGGCCTCGCTGTGGAACCGGAGCTTCGACTACGCCGTCCGCCTCCTCGCCAGGTCGCTCTTCACCATCGTCGCGAGGATCGCCCAAGTGTTCGGCCTGGAGCCCAAGAACGTCGCCACCATGGACGACGACGCCATGATCTCGCTCGCCACCACCCGCCTCTCATGGACTAATTCCTTCGTCGGCAGCGTGCATTCCTTGGTCTATCCTTCAGATTTCGCCGCAGATACACATACTCCCCGGAGATCATTGCTCGATGCAAAATCCGGCAAGGTCTCCAATGGCGGCGAACATGTTCGTCGGTTTC-TTGTCTCCAGGAGCCAGAGCTTGAGACAACTCAAATGGCCAATGGCCGGGAAGCACCTCATCGGCTACATGGTCAGTGGGAGCAGGTCTCCGGACAGCGAGAGGTGGAAGATCCATGGAGATGGTGATCTTCCACTCAGCTTCAGCTACTACGTGTCAGCCAGCAACGACGATTATTCCAGCATCAATTCCCCGTTCCAAGGCGACCACACAAATTCGAATCTCTCAATAGTGTTCGAGTCGTCATCGCACAACTGGGTGATGAACGCGCCCGCGGTGACGACACTCGGCGCCGCGGCGCTGGCCCTGCATTACGCGAATCTCATCATCTTCATCGAGAAGCTCGNCGTCGCGCCTCGCCATATCTGCCCAGACGAGAGAGATGCCCTGTACAACATGCTCACCGATCGGATTCGGGCATCTCTCAGAGCTCGCCTCAGGCCGATCGCCAAGAACATGGCAGCCTCTTCATCATCTTCTTCTTCAGCTTGTGATCCTGCCATGGCTGCAGAGTGGTCTGGCACGGTGCAGCGCATCCTCGGATGGTTAGCTCCGCTGGCTCACAACATGCTGCGATGGCAATCGGAGAGGAATTTCGAGCAGAGAAATGTTGCGTCGAGCGGTACAGGTGTGCTGCTCCTGCAGACGCTGCATTTTGCTGACCAGAAGAAGAGCGAGGCTGCCATAGTTGAGCTGCTTGTTGGGTTGAACTACCTGTGGAAAGCTGGAAGAGAGCTTGATGCAAAAGCTAAAAAATTGGTGTCAGGTGGTGGAAAACGCGATGAATTCACAGATTATTATAGTAGTAATAGGATGGAATGTCGATAAGATGCAACTGAATTGGATGAGCCTGGGATATGTAAGCAGAGGTAGCATCAGATTCCCTTTGCTGATTTGCTCCTTCAATCCCTACAATTGGCATTATGACACGCATCTATTCTGTAATTGATGCTCCTGCATTTTAGTGTATAAGTGTAGGGCAGCTGATCATTTTAATGTAAATTTACCATGTAATTCATTAGTGAAGACGTATCAGGTTTAATAAGGTCACCGGAACAGAAC]

[+] EMBL C91868               [CTCCGCGCGGCCTCGCTGTGGAACCGGAGCTTCGACTACGCCGTCCGCCTCCTCGCCAGGTCGCTCTTCACCATCGTCGCGAGGATCGCCCAAGTGTTCGGCCTGGAGCCCAAGAACGTCGCCACCATGGACGACGACGCCATGATCTCGCTCGCCACCACCCGCCTCTCATGGACTAATTCCTTCGTCGGCAGCGTGCATTCCTTGGTCTATCCTTCAGATTTCGCCGCAGATACACATACTCCCCGGAGATCATTGCTCGATGCAAAATCCGGCAAGGTCTTCAATGGCGGCGAACATGTTCGTCGGTTTCTTTGTCTNCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA767133             [                           AGCTTCGACTACGCCGTCCGCCTCCTCGCCAGGTCGCTCTTCACCATCGTCGCGAGGATCGCCCAAGTGTTCGGCCTGGAGCCCAAGAACGTCGCCACCATGGACGACGACGCCATGATCTCGCTCGCCACCACCCGCCTCTCATGGACTAATTCCTTCGTCGGCAGCGTGCATTCCTTGGTCTATCCTTCAGATTTCGCCGCAGATACACATACTCCCCGGAGATCATTGCTCGATGCAAAATCCGGCAAGGTCTCCAATGGCGGCGAACATGTTCGTCGGTTTC TTGTCTCCAGGAGCCAGAGCTTGAGACAACTCAAATGGCCAATGGCCGGGAAGCACCTCATCGGCTACATGGTCAGTGGGAGCAGGTCTCCGGACAGCGAGAGGTGGAAGATCCATGGAGATGGTGATCTTCCACTCAGCTTCAGCTACTACGTGTCAGCCAGCAACGACGATTATTCCAGCATCAATTCCCCGTTCCAAGGCGACCACACAAATTCGAATCTCTCAATAGTGTTCGAGTCGTCATCGCACAACTGGGTGATGAACGCGCCCGCGGTGACGACACTCGGCGCCGCGGCGCTGGCCCTGCATTACGCGAATCTCATCATCTTCATCGAGAAGCTCGNCGTCGCGCCTCGCCATATCTGCCCAGACGAGAGAGATGCCCTGTACAACATGCTCACCGATCGGATTCGGGCATCTCTCANAGCTCGCCTCAGGCCGATCGNCAAG ACATGGCAGCCTCTTCATCATCTTCTTNTT AGCTTGGGATCCTGNCATGGCTGCAAAGGGGTCTGGCACGGGGCANCGCATCCTCGGATGGNTAGCTCCGCTGGCTCAC ACATGCTGNGATGGCAATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK107470             [                                                                                                                                                                                                                         CAGATTTCGCCGCAGATACACATACTCCCCGGAGATCATTGCTCGATGCAAAATCCGGCAAGGTCTCCAATGGCGGCGAACATGTTCGTCGGTTTC TTGTCTCCAGGAGCCAGAGCTTGAGACAACTCAAATGGCCAATGGCCGGGAAGCACCTCATCGGCTGCATGGTCAGTGGGAGCAGGTCTCCGGACAGCGAGAGGTGGAAGATCCATGGAGATGGTGATCTTCCACTCAGCTTCAGCTACTACGTGTCAGCCAGCAACGACGATTATTCCAGCATCAATTCCCCGTTCCAAGGCGACCACACAAATTCGAATCTCTCAATAGTGTTCGAGTCGTCATCGCACAACTGGGTGATGAACGCGCCCGCGGTGACGACACTCGGCGCCGCGGCGCTGGCCCTGCATTACGCGAATCTCATCATCTTCATCGAGAAGCTCGCCGTCGCGCCTCGCCATATCTGCCCAGACGAGAGAGATGCCCTGTACAACATGCTCACCGATCGGATTCGGGCATCTCTCAGAGCTCGCCTCAGGCCGATCGCCAAGAACATGGCAGCCTCTTCATCATCTTCTTCTTCAGCTTGTGATCCTGCCATGGCTGCAGAGTGGTCTGGCACGGTGCAGCGCATCCTCGGATGGTTAGCTCCGCTGGCTCACAACATGCTGCGATGGCAATCGGAGAGGAATTTCGAGCAGAGAAATGTTGCGTCGAGCGGTACAGGTGTGCTGCTCCTGCAGACGCTGCATTTTGCTGACCAGAAGAAGAGCGAGGCTGCCATAGTTGAGCTGCTTGTTGGGTTGAACTACCTGTGGAAAGCTGGAAGAGAGCTTGATGCAAAAGCTAAAAAATTGGTGTCAGGTGGTGGAAAACGCGATGAATTCACAGATTATTATAGTAGTAATAGGATGGAATGTCGATAAGATGCAACTGAATTGGATGAGCCTGGGATATGTAAGCAGAGGTAGCATCAGATTCCCTTTGCTGATTTGCTCCTTCAATCCCTACAATTGGCATTATGACACGCATCTATTCTGTAATTGATGCTCCTGCATTTTAGTGTATAAGTGTAGGGCAGCTGATCATTTTAATGTAAATTTACCATGTAATTCATTAGTGAAGACGTATCAGGTTTAATAAGGTCACCGGAACAGAAC]
[+] EMBL AU090491             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAATATCTCCCCAGACGAGAGAGATCCCCTGTACAACATGTTCACCGATCGGATTCGGGCATCTCTCAGAGCTCGCCTCAGGCCGATCGCCAAGAACATGGCAGCCTCTTCATCATCTTCTTCTTCAGCTTGTGATCCTGCCATGGCTGCAGAGTGGTCTGGCACGGTGCAGCGCATCCTCGGATGGTTA CTCCGCTGGCTCACAACATGCTGCGATGGCAATCGGAGAGGAATTTCGAGCAGAGAAATGTTGCGTCGAGCGGTACAGGTGTGCTGCTCCTGCAGACGCTGCATTTTGCTGACCAGAAGAAGAGCGAGGCTGCCATAGTTGAGCTGCTTGTTGGGTTGAACTACCTGTGGAAAGCTGGAAGAGAGCTTGATGCAAAAGCTAAAAAATTGGTGTCAGGTGGTGGAAAACGCGATGAATTCACAGATTATTATAGTAGTAATAGGATGGAATGTCGATAAGATGCAACTGAATTGGATGAGCCTGGGATATGTAAGCAGAGGTAGCATCAGATTCCCTTTGCTGATTTGCTCCTTCAATCCCTACAATTGGCATTATGACACGCATCTATTCTGTAATTGATGCTCCTGCATTTTAGTGTATAAGTGTAGGGCAGCTGATCATTTTAATGTAAATTTACCATGTAATTCATTAGTGAAGACGTATCAGGTTTAATAAaaaaaaa          ]


>consensus_6513#0 CTCCGCGCGGCCTCGCTGTGGAACCGGAGCTTCGACTACGCCGTCCGCCTCCTCGCCAGG TCGCTCTTCACCATCGTCGCGAGGATCGCCCAAGTGTTCGGCCTGGAGCCCAAGAACGTC GCCACCATGGACGACGACGCCATGATCTCGCTCGCCACCACCCGCCTCTCATGGACTAAT TCCTTCGTCGGCAGCGTGCATTCCTTGGTCTATCCTTCAGATTTCGCCGCAGATACACAT ACTCCCCGGAGATCATTGCTCGATGCAAAATCCGGCAAGGTCTCCAATGGCGGCGAACAT GTTCGTCGGTTTCTTGTCTCCAGGAGCCAGAGCTTGAGACAACTCAAATGGCCAATGGCC GGGAAGCACCTCATCGGCTACATGGTCAGTGGGAGCAGGTCTCCGGACAGCGAGAGGTGG AAGATCCATGGAGATGGTGATCTTCCACTCAGCTTCAGCTACTACGTGTCAGCCAGCAAC GACGATTATTCCAGCATCAATTCCCCGTTCCAAGGCGACCACACAAATTCGAATCTCTCA ATAGTGTTCGAGTCGTCATCGCACAACTGGGTGATGAACGCGCCCGCGGTGACGACACTC GGCGCCGCGGCGCTGGCCCTGCATTACGCGAATCTCATCATCTTCATCGAGAAGCTCGNC GTCGCGCCTCGCCATATCTGCCCAGACGAGAGAGATGCCCTGTACAACATGCTCACCGAT CGGATTCGGGCATCTCTCAGAGCTCGCCTCAGGCCGATCGCCAAGAACATGGCAGCCTCT TCATCATCTTCTTCTTCAGCTTGTGATCCTGCCATGGCTGCAGAGTGGTCTGGCACGGTG CAGCGCATCCTCGGATGGTTAGCTCCGCTGGCTCACAACATGCTGCGATGGCAATCGGAG AGGAATTTCGAGCAGAGAAATGTTGCGTCGAGCGGTACAGGTGTGCTGCTCCTGCAGACG CTGCATTTTGCTGACCAGAAGAAGAGCGAGGCTGCCATAGTTGAGCTGCTTGTTGGGTTG AACTACCTGTGGAAAGCTGGAAGAGAGCTTGATGCAAAAGCTAAAAAATTGGTGTCAGGT GGTGGAAAACGCGATGAATTCACAGATTATTATAGTAGTAATAGGATGGAATGTCGATAA GATGCAACTGAATTGGATGAGCCTGGGATATGTAAGCAGAGGTAGCATCAGATTCCCTTT GCTGATTTGCTCCTTCAATCCCTACAATTGGCATTATGACACGCATCTATTCTGTAATTG ATGCTCCTGCATTTTAGTGTATAAGTGTAGGGCAGCTGATCATTTTAATGTAAATTTACC ATGTAATTCATTAGTGAAGACGTATCAGGTTTAATAAGGTCACCGGAACAGAAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)