cluster # 6518

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Oryza sativa
cluster # 6518 cluster # 6518 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6518#0 length = 847 sequences # 3

consensus_6518#1 length = 590 sequences # 1

consensusID : consensus_6518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 847
fasta sequence

                              [ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAG-ACATCTTGCAAGAGTATG-CCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTNCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTCAGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTTCAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTCCTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTACTAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS2107A             [ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAG ACATCTTGCAAGAGTATG CCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU101939             [                                                                                                                                                 CGANCGGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGCCCATCTTGCAAGAGTATGCCCGACGAGCTCCAGAACTACAGCATNTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTNCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTCAGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTTCAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTCCTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTACTAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF332753             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAAAAAaaaaaa                                                                                                            ]




>consensus_6518#0
ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCT
TCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGA
CCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAAGGAG
AAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGAGCTC
CAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACA
GAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTNCACT
TTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATTTTGC
GAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTCAGAG
CAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTTCAAG
ATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTCCTGG
TTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGT
TGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTAT
TTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTACTAGG
GGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAAAAAA
AAAAAAA

consensusID : consensus_6518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTGTTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTTCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA]

[+] EMBL CF332754             [TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTGTTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTTCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA]




>consensus_6518#1
TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGG
CGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGG
CGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGT
GTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTG
TTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCA
GGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGA
GCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTG
GACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTT
CACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATT
TTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6518#0      --------------ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGG 46
consensus_6518#1      TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGG 60
                                    **********************************************

consensus_6518#0      CGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGG 106
consensus_6518#1      CGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGG 120
                      ************************************************************

consensus_6518#0      CGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGT 166
consensus_6518#1      CGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGT 180
                      ************************************************************

consensus_6518#0      GTACAAAAA--------------------------------------------------- 175
consensus_6518#1      GTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTG 240
                      *********                                                   

consensus_6518#0      -----------------------------------------------------------A 176
consensus_6518#1      TTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCA 300
                                                                                 *

consensus_6518#0      GGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGA 236
consensus_6518#1      GGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGA 360
                      ************************************************************

consensus_6518#0      GCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTG 296
consensus_6518#1      GCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTG 420
                      ************************************************************

consensus_6518#0      GACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTN 356
consensus_6518#1      GACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTT 480
                      *********************************************************** 

consensus_6518#0      CACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATT 416
consensus_6518#1      CACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATT 540
                      ******************************************************* ****

consensus_6518#0      TTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTC 476
consensus_6518#1      TTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA---------- 590
                      ********************************  ****************          

consensus_6518#0      AGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTT 536
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      CAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTC 596
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      CTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTA 656
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAA 716
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTAC 776
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      TAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAA 836
consensus_6518#1      ------------------------------------------------------------
                                                                                  

consensus_6518#0      AAAAAAAAAAA 847
consensus_6518#1      -----------