These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 847 fasta sequence [ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAG-ACATCTTGCAAGAGTATG-CCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTNCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTCAGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTTCAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTCCTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTACTAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS2107A [ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAG ACATCTTGCAAGAGTATG CCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGT ] [+] EMBL AU101939 [ CGANCGGAAGATTTCTCAAGTGTACAAAAAAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGCCCATCTTGCAAGAGTATGCCCGACGAGCTCCAGAACTACAGCATNTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTNCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTCAGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTTCAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTCCTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTACTAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF332753 [ CGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTATTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAATTATTTGTTACTAAAAAaaaaaa ] consensusID : consensus_6518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTGTTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTTCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA] [+] EMBL CF332754 [TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGGCGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGGCGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGTGTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTGTTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCAGGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGAGCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTGGACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTTCACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATTTTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6518#0 --------------ACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGG 46 consensus_6518#1 TTGCTCATTTTCTCACTGCTTTAATCAGAGCAGCCATTTGCAGTCGAGAGCATCAGCAGG 60 ********************************************** consensus_6518#0 CGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGG 106 consensus_6518#1 CGCGGATAATGGCTTCAGCCGCTCTTCCTCATCCCAGGCGTCTCGCCTGATGGTCATCGG 120 ************************************************************ consensus_6518#0 CGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGT 166 consensus_6518#1 CGTGGGGAACGAGACCAGCAGCCGCCCGTGTTTGAGATCCGAACAGAAGATTTCTCAAGT 180 ************************************************************ consensus_6518#0 GTACAAAAA--------------------------------------------------- 175 consensus_6518#1 GTACAAAAAGGTTAGTATGCATTCTCCATTTTCCTTGATAGAGTTTTTTTTTCTTTTGTG 240 ********* consensus_6518#0 -----------------------------------------------------------A 176 consensus_6518#1 TTTCTCATGTTGTTGCCCCCATGTTTCTTTTGCCCTTCACATTTTGTTAAAATTTTTCCA 300 * consensus_6518#0 GGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGA 236 consensus_6518#1 GGAGAAGCCGGCATGTAAGGTTTAGATATGGAAAGACATCTTGCAAGAGTATGCCGACGA 360 ************************************************************ consensus_6518#0 GCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTG 296 consensus_6518#1 GCTCCAGAACTACAGCATGTCGAGGCAGTACAGCATGAATCTTTTTCCTTTTTTTACGTG 420 ************************************************************ consensus_6518#0 GACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTN 356 consensus_6518#1 GACAGAAGATCTTATTCGGTGTTGTTTATGTTTTGACCCTCTCCCAACATGCTTGTTTTT 480 *********************************************************** consensus_6518#0 CACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGNCATT 416 consensus_6518#1 CACTTTTTTTTTTTTTTGCAAGACACTTCTGCGTGCAAGGTTTGGATATAGGAAGACATT 540 ******************************************************* **** consensus_6518#0 TTGCGAGACTATGTCAACGAGCTGCTAAAGTAGTACATCGGATGCCCCCATAATCCCTTC 476 consensus_6518#1 TTGCGAGACTATGTCAACGAGCTGCTAAAGTACAACATCGGATGCCCCCA---------- 590 ******************************** **************** consensus_6518#0 AGAGCAGTTATCGATTCTTTGAAGGTTGTGGAGGAGAAAAATCGCCAGCTTGTTCTTCTT 536 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 CAAGATGAAATCGAAAGATGCCACCGTTTGCTTCAACAGAAATTCGACGACACCGAAGTC 596 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 CTGGTTGAGCCTCTCGCGTCATGAGGGCTCGTTCGAGAAGGATATTCTCTATGTTTATTA 656 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TTGTTGTAGTCTCATTTCTTGTAACCAAAAACCTTATATTTGGTTCCTAGTTTATTGTAA 716 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TTATTTGTTACTAATAACTTCTTAGCGTCCAGTGTAGTATCATGGTAATCGCCGTGTTAC 776 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 TAGGGGGCGACAATCGTATTGTGGCAGATATAAGCCAAGTTAATTAAGGTGCAAAAAAAA 836 consensus_6518#1 ------------------------------------------------------------ consensus_6518#0 AAAAAAAAAAA 847 consensus_6518#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||