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Oryza sativa
cluster # 6525 cluster # 6525       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6525#0 length = 1502 sequences # 4  

consensusID : consensus_6525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1502
fasta sequence
                              [TTATTTCTGAATAATATCTACCTTTTGAAGTTGGGCAAATGTTACACTACACATGTAGTAGTAATAGCCAAAAAAGAATTGTGGGAGATACACCGACTTCATATCATGCTAGCAACGCTATTCTCAAGCTTTTTTTATAGTCAATACTTCATTCCTAAGAAAGGACATCCTTTTGTTTTCAAAAAACAATTATCATGTGGACACAACATTACAACCGGCCCCATTTGCAGTTCTGCATCATCACGATGCAAAGCATTCCTAATGACTTGCATATGGAGAAACTGTTTCACCATGATTCAACGTCAGGAAACATACTCCAAAACAAGGAGACACCTTCAAGTTAACTGATGTATTATGTTCTGTAACTGTATATGGAAGTCCATGGAGAAACGACAACCTTTGGAAACTGGTAGAATGAATGGGTCAACCTTGGACAAAGTGGTTAAAAGAACACTATGCACAAATGGTACAAAAGCATCAATCAATTGGGTGCTTGTCTGTTTGCCGGGAGGTGTATTGGGCAGAAATCAGAAGCAAGGACAGAAATGCACTAGCCACAAATATAGCATCAAACCAGCGGTGGTAAAAGTCAAACTGGATATCACCACCCAAAACATCTGTAATGATCACCCTATACTCATTTGCCAGGCTTTTCCTTATGAGAAGAATAGATGATATGAAGTACATTCCCATGATCTCAGATAGAAAAAGGACAACATTGGTTGTTGAACCACTCCCAACTCTAGAAACAGCAAAGAAGAACTGCATAGAAAGTGAGACACCATAGAATTGCGTTCTAATGCTCTATTAACAAGGGTACAGTAACAACTAACAGCTGTATGTATAGATAACTGAAAGAAATAACTCACCTTCATAACATTTGCCAAGAAACCTCGAACAGATATGACAACCAACATCCCGATAAATATGAGAGATATATACTGCAACAAAAAGTGAACAGGCAGGACACATGTAAGCTATAGAACATGAACAAAGAAGCAAAAAGGAAAGGAGGTAACCAGGTTGCATGAAAGTCAAACCAAGCCAATTCAAAGCACCTCAAAATTAATGTTTAATCTACATATGGTACTTTATGGAAAGAGCCAAAACGCAAAGGACATGCCAAAAAATATCTGTATACCTATTTTATGGGAATTTTGAAAATTGCTTACAACTTACATAGCGGTTCCAATTAACATCAAATGTACAGAGAACTGCAGTTCAGAGTAATAATGAATTTATTCTCGATTCTGGAATTGTTCACCTTTTAATTTTAGCATGTGTACCTGTGATAAAAGAGTGACATCAATACCAATGTCAAAATGCCTCAAGAAGATGGTAATTGTCATGGTTACTGGATCAACAGAACCTGCCTGGAAAGGGGGGAAATAGTATGTAGGTTAACAATGGAAATTTCCAGAATTAGGAAAAAAGAAACAAGCAATTGGTTTGAGTTTGACGAAGGAAAGAAGTGATTTTACCTCTTTAAAGACAACACTCTG]

[+] EMBL CF305998             [TTATTTCTGAATAATATCTACCTTTTGAAGTTGGGCAAATGTTACACTACACATGTAGTAGTAATAGCCAAAAAAGAATTGTGGGAGATACACCGACTTCATATCATGCTAGCAACGCTATTCTCAAGCTTTTTTTATAGTCAATACTTCATTCCTAAGAAAGGACATCCTTTTGTTTTCAAAAAACAATTATCATGTGGACACAACATTACAACCGGCCCCATTTGCAGTTCTGCATCATCACGATGCAAAGCATTCCTAATGACTTGCATATGGAGAAACTGTTTCACCATGATTCAACGTCAGGAAACATACTCCAAAACAAGGAGACACCTTCAAGTTAACTGATGTATTATGTTCTGTAACTGTATATGGAAGTCCATGGAGAAACGACAACCTTTGGAAACTGGTAGAATGAATGGGTCAACCTTGGACAAAGTGGTTAAAAGAACACTATGCACAAATGGTACAAAAGCATCAATCAATTGGGTGCTTGTCTGTTTGCCGGGAGGTGTATTGGGCAGAAATCAGAAGCAAGGACAGAAATGCACTAGCCACAAATATAGCATCAAACCAGCGGTGGTAAAAGTCAAACTGGATATCACCACCCAAAACATCTGTAATGATCACCCTATACTCATTTGCCAGGCTTTTCCTTATGAGAAGAATAGATGATATGAAGTACATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL C28460               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aTGGGCAG AATCAG AGCAGGGACAGAATTGCACTAGCCAC AATATAGCATCAAACCAGCGGTGGTAAAAGTCAAACTGGATATCACCACCCAAAACATCTGTAATGATCACCCTATACTCATTTGCCAGGCTTTTCCTTATGAGAAGAATAGATGATATGAAGTACATTCCCATGATCTCAGATAGAAAAAGGACAACATTGGTTGTTGAACCACTCCCAACTCTAGAAACAGCAAAGAAGAACTGCATAGAAAGTGAGACACCATAGAATTGCGTTCTAATGCTCTATTAACAAGGGTACAGTAACAACTAACAGCTGTATGTATAGATAACTGAAAGAAATAACTCACCTTCATAACATTTGCCAAGAAACCTCGAACAGATATGACAACCAACATCCCGATAAATATGAGAGATATATACTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA998019             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCAAGAAACCTCGAACAGATATGACAACCAACATCCCGATAAATATGAGAGATATATACTGCAACAAAAAGTGAACAGGCAGGACACATGTAAGCTATAGAACATGAACAAAGAAGCAAAAAGGAAAGGAGGTAACCAGGTTGCATGAAAGTCAAACCAAGCCAATTCAAAGCACCTCAAAATTAATGTTTAATCTACATATGGTACTTTATGGAAAGAGCCAAAACGCAAAGGACATGCCAAAAAATATCTGTATACCTATTTTATGGGAATTTTGAAAATTGCTTACAACTTACATAGCGGTTCCAATTAACATCAAATGTACAGAGAACTGCAGTTCAGAGTAATAATGAATTTATTCTCGATTCTGGAATTGTTCACCTTTTAATTTTAGCATGTGTACCTGTGATAAAAGAGTGACATCAATACCAATGTCAAAATGCCTCAAGAAGATGGTAATTGTCATGGTTACTGGATCAACAGAACCTGCCTGGAAAGGGGGGAAATAGTATGTAGGTTAACAATGGAAATTTCCAGAATTAGGAAAAAAGAAACAAGCAATTGGTTTGAGTTTGACGAAGGAAAGAAGTGATTTTACCTCTTTAAAGAC         ]
[-] EMBL BU099181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GATAAAAGAGTGACATCAATACCAATGTCAAAATGCCTCAAGAAGATGGTAATTGTCATGGTTACTGGATCAACAGAACCTGCCTGGAAAGGGGGGAAATAGTATGTAGGTTAACAATGGAAATTTCCAGAATTAGGAAAAAAGAAACAAGCAATTGGTTTGAGTTTGACGAAGGAAAGAAGTGATTTTACCTCTTTAAAGACAACACTCTG]


>consensus_6525#0 TTATTTCTGAATAATATCTACCTTTTGAAGTTGGGCAAATGTTACACTACACATGTAGTA GTAATAGCCAAAAAAGAATTGTGGGAGATACACCGACTTCATATCATGCTAGCAACGCTA TTCTCAAGCTTTTTTTATAGTCAATACTTCATTCCTAAGAAAGGACATCCTTTTGTTTTC AAAAAACAATTATCATGTGGACACAACATTACAACCGGCCCCATTTGCAGTTCTGCATCA TCACGATGCAAAGCATTCCTAATGACTTGCATATGGAGAAACTGTTTCACCATGATTCAA CGTCAGGAAACATACTCCAAAACAAGGAGACACCTTCAAGTTAACTGATGTATTATGTTC TGTAACTGTATATGGAAGTCCATGGAGAAACGACAACCTTTGGAAACTGGTAGAATGAAT GGGTCAACCTTGGACAAAGTGGTTAAAAGAACACTATGCACAAATGGTACAAAAGCATCA ATCAATTGGGTGCTTGTCTGTTTGCCGGGAGGTGTATTGGGCAGAAATCAGAAGCAAGGA CAGAAATGCACTAGCCACAAATATAGCATCAAACCAGCGGTGGTAAAAGTCAAACTGGAT ATCACCACCCAAAACATCTGTAATGATCACCCTATACTCATTTGCCAGGCTTTTCCTTAT GAGAAGAATAGATGATATGAAGTACATTCCCATGATCTCAGATAGAAAAAGGACAACATT GGTTGTTGAACCACTCCCAACTCTAGAAACAGCAAAGAAGAACTGCATAGAAAGTGAGAC ACCATAGAATTGCGTTCTAATGCTCTATTAACAAGGGTACAGTAACAACTAACAGCTGTA TGTATAGATAACTGAAAGAAATAACTCACCTTCATAACATTTGCCAAGAAACCTCGAACA GATATGACAACCAACATCCCGATAAATATGAGAGATATATACTGCAACAAAAAGTGAACA GGCAGGACACATGTAAGCTATAGAACATGAACAAAGAAGCAAAAAGGAAAGGAGGTAACC AGGTTGCATGAAAGTCAAACCAAGCCAATTCAAAGCACCTCAAAATTAATGTTTAATCTA CATATGGTACTTTATGGAAAGAGCCAAAACGCAAAGGACATGCCAAAAAATATCTGTATA CCTATTTTATGGGAATTTTGAAAATTGCTTACAACTTACATAGCGGTTCCAATTAACATC AAATGTACAGAGAACTGCAGTTCAGAGTAATAATGAATTTATTCTCGATTCTGGAATTGT TCACCTTTTAATTTTAGCATGTGTACCTGTGATAAAAGAGTGACATCAATACCAATGTCA AAATGCCTCAAGAAGATGGTAATTGTCATGGTTACTGGATCAACAGAACCTGCCTGGAAA GGGGGGAAATAGTATGTAGGTTAACAATGGAAATTTCCAGAATTAGGAAAAAAGAAACAA GCAATTGGTTTGAGTTTGACGAAGGAAAGAAGTGATTTTACCTCTTTAAAGACAACACTC TG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)