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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1391 fasta sequence
[CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGCGATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGGAGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTGGAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAGGAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGAGCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTTCTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGCCCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTCATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGTGATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGAGCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCCTGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTTA------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100600 [CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGCGATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGGAGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTGGAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAGGAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGAGCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTTCTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGCCCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTCATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGTGATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGAGCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCCTGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTT ]
[-] EMBL CA760255 [ GATTGATCCTGAGGAGGAGAGGAAACTGTTGCCCAAGGAAAAGAAGGCATCCATGGAATTTTACAGCACCACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGAGGAAGCCAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGNCGCCAACATAAATTTCCTAAAGTAACTACGCAAATTTTCTTTCACAAATTCCATCCACCTCTCCCAGCCTATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATTTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATGGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTA A AAAAAAAAAAAAAAAAAAA ]
[+] EMBL CF302606 [ ACAAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAAGCTATTGTTTACTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GGATATTATGCGCAAGAAGCCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACACATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAGCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA]
[+] EMBL BQ908837 [GGATATTATGCGCAAGAAGCCAGAGGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATACAGATGAAGACGACACATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATTCCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATATATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCAGAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCTGCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTTCCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGCGAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAGTGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCAAGCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6530#0 CAAGCTCCGACCTCTCTCCCCTCCTCCGCGCCCTAACCCTAGGCCCTCCGCGTCGCCGGC 60
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GATGAGCGGCCTCCGAGCCATCTCCACCCTACTCCACACCTGCGCCGCCGCCGCCGCGGG 120
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 AGGCTCCAGTCGGCGGGTCGCTCTCGCGCCGCCGCTCGGTCGGAGCTTCCGCGTCCCGTG 180
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GAGGGCGCCCTCCGCGTTCGTCTTCGACGAGGTCGCGAGGGCCGCGGGGGGCGAGCGGAG 240
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GAGGGTGTCTACGCGCGCAGCGAGCTGGGATTCGGAGAAATCACCGTACGAGACGCTCGA 300
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GCTGGACAGGGATGCAGATGAGGAGACAATAAAGACGGCATACAGGCGATTGGCCAAGTT 360
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 CTATCACCCTGATGTTTATGATGGTAAGGGAACCCTTGAGGAAGGGGAAGCTGCCGAAGC 420
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 CCGCTTCATCAAAATCCAAGCAGCATATGAGCTACTGATTGATGACCAAAGGAGAAAGTC 480
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 ATATGACAGAGAGCATCATGTGAATCCAATGAAGGCTTCTCAGGCATGGATGGAGTGGGT 540
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GATGAAAAAGCGAAAAGCTTTTGATCAACGTGGTGACATGGCAGTAGCTGCTTGGGCTGA 600
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 GCAACAGCATCGGGAAATGACATTACGTGCTCGCCGTCTCTCACGATCAAAGATTGATCC 660
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 TGAGGAGGAGAGGAAACTGTTTGCCAAGGAAAAGAAGGCATCCATGGAATTCTACAGCAC 720
consensus_6530#1 ------------------------------------------------------------
consensus_6530#0 CACTCTAAAGAGGCATACCCTTGTCCTGCGGAAGAGGGATATTATGCGCAAGAAGGCAGA 780
consensus_6530#1 ------------------------------------GGATATTATGCGCAAGAAGCCAGA 24
******************* ****
consensus_6530#0 GGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATAC 840
consensus_6530#1 GGAAGACAAGAAGAAAGAGATCAGTAGACTTCTAGCTCTTGAGGGGCTTGAGCTAGATAC 84
************************************************************
consensus_6530#0 AGATGAAGACGACAACATAAATTTCCTAAAGTAACTACGCAAATGTT-CTTTCACAAATT 899
consensus_6530#1 AGATGAAGACGACA-CATAAATTTCCTAAAGTAACTACGCAAATGTTTCTTTCACAAATT 143
************** ******************************** ************
consensus_6530#0 CCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTGCATTTAGTGAATATA 959
consensus_6530#1 CCATCCACCTCTCCCAGCATATACTAGAAGGTTTCGCCAAAGTTCCATTTAGTGAATATA 203
******************************************** ***************
consensus_6530#0 TATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCA 1019
consensus_6530#1 TATTGACGCAAGAAAAAATGAGCTCAAGGGAAACATTGGATCATAACTGTTGGAAATCCA 263
************************************************************
consensus_6530#0 GAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCT 1079
consensus_6530#1 GAATTCTCCCATGGAGCAGAAAGATGTGGCCAACGGCGAAATCCATCTGGGCCAACTGCT 323
************************************************************
consensus_6530#0 GCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTT 1139
consensus_6530#1 GCAACCTGCAGCCCAGTGATTCAATCAAAGTTCTTTATGCAGATCCTCTATTCATTGTTT 383
************************************************************
consensus_6530#0 CCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGC 1199
consensus_6530#1 CCAGCAGATGGACTGTATTGCAAGGGATATGACTATCAGATATGTATACTTGTTACATGC 443
************************************************************
consensus_6530#0 GAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAAAG 1259
consensus_6530#1 GAAATTGTAATTATGCTAGGGTAATTTTGTAACCTTCTTGTTTGTCCGAGCAAAACAA-G 502
********************************************************** *
consensus_6530#0 TGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCA 1319
consensus_6530#1 TGCATTCTCTGTGTGGTGCCTCTAGCTCTGACACTTTGTAAATACTACAGAAAACATCCA 562
************************************************************
consensus_6530#0 AAGCTATTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1379
consensus_6530#1 A-GCTATTGTTTACTGGGCATGAATAATGTTGTTTCCNAATCCAAAAAAAAAA------- 614
* *********** * ** ** ** **********
consensus_6530#0 AAAAAAAAAAAA 1391
consensus_6530#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||