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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1261 fasta sequence
[CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA]
[+] EMBL AK064621 [CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATG ]
[+] EMBL CA767108 [ acaaggggGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAA ]
[-] EMBL CB655468 [ TTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATATTTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAGCAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCATATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCAA]
consensusID : consensus_6531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA]
[+] EMBL CB655467 [AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6531#0 CATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACTCCGGCGAG 60
consensus_6531#1 ----------------AAACCCTTGAAAAGGCGACCGGGTCGCGGCCCGACTCCGGCGAG 44
*** * *********** ********************
consensus_6531#0 GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCAAAGGCGGC 120
consensus_6531#1 GTCGTCGACCAAGGCCGCCGAGATTCGTCGGGACTTCTCGCCAAAAATAGCAAAGGCGGC 104
********************************* **************************
consensus_6531#0 GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 180
consensus_6531#1 GGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCT 164
************************************************************
consensus_6531#0 GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 240
consensus_6531#1 GCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCG 224
************************************************************
consensus_6531#0 CCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 300
consensus_6531#1 CCGGATAAATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCT 284
******* ****************************************************
consensus_6531#0 CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 360
consensus_6531#1 CCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCA 344
************************************************************
consensus_6531#0 TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 420
consensus_6531#1 TAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACA 404
************************************************************
consensus_6531#0 GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 480
consensus_6531#1 GATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAG 464
************************************************************
consensus_6531#0 TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 540
consensus_6531#1 TTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAA 524
************************************************************
consensus_6531#0 GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACG 600
consensus_6531#1 GAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGACAACTCATCCAAGTATTACG 584
**************************************** *******************
consensus_6531#0 GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACTTTCAACAT 660
consensus_6531#1 GTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACA---------- 634
**************************************************
consensus_6531#0 CAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGG 720
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 GGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGT 780
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 CAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACT 840
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 CGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAA 900
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 ATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGATGAGGCGAA 960
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 GAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCTATTATATG 1020
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 TAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAATAACCCCACGTTCATAT 1080
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 TTCGTTTTACGTAGGCAATTTTAGCACCGCACACCACTGTTATTATCCTTCCGGCTTCAG 1140
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 CAAGGTGGTAACTGGGACAGGCGCTGGATGGGGAAAAAACGAATTAATTTATTTTTTCCA 1200
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 TATAATGTACAATTATATAACAATGAAAAGGGAGCACNGGTTTTTGGAAATGGATTTTCA 1260
consensus_6531#1 ------------------------------------------------------------
consensus_6531#0 A 1261
consensus_6531#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||