cluster # 6536

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Oryza sativa
cluster # 6536 cluster # 6536 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6536#0 length = 756 sequences # 3

consensus_6536#1 length = 134 sequences # 1

consensusID : consensus_6536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 756
fasta sequence

                              [TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAATCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAG--GAAGAGG-CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG-AGGGGTCATGGTA-TTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCAC-AATAGC-AAAACTGAACACATCAGCTTTGTTATCATAGGGTTGATGATTTATGACCTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGAAAACGAGCTACACCAAAATCTGCCACTTTCACGACA]

[+] EMBL CB676811             [TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAATCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAGTAGCAG GG CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAAACCGAAAAAATTAGGCCCCCAAATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACCCTCTACTCCTCTCAACATTAGGGAGGCACCCATCCTAAACAAGCACCTCGGGGAACCAACGAAACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAATCATCTTGTCGTTGGGTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAAAAAATCCTCTAATTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG AGGGGTCCTGGTA TTATAAGGGATCTTGGACGTTATGACCTCCCAAAGCAC AATAGC AAAACTGAACCCCTCAGCTTTGTTATCATAGGGT                                                                                                               ]
[-] EMBL BQ908379             [                                       TTTTTTACCCAAAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAG  TAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAGAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAGCATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAGAAGGGGTCATGGTACTTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCACAAATAGCAAAAACTGAACACATCAGCTTT                                                                                                                            ]
[+] EMBL CB652354             [                                                                                                     GAAGAGG CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTACCCCCAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAAGATTAGTGAGGCACACATCCTAAACAAGCACATGGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATAAAGTCTAATAACTGGGGATGATCATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG AGGGGTCATGGTA TTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCAC AATAGC AAAACTGAACACATCATCTTTGTTATCATAGGGTTGATGATTTATGACCTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGAAAACGAGCTACACCAAAATCTGCCACTTTCACGACA]




>consensus_6536#0
TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAA
TCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAGGAAGAGGCGTTGATATATCAA
GCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAGACCGAAAAAATTAG
GCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTAC
GCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGAA
CGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGT
CGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCT
AATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAG
TCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCT
ACAGCTGCTTGGAGAGGGGTCATGGTATTATAAGGGATCTTGGACGTTATGAGCTCCCAA
AGCACAATAGCAAAACTGAACACATCAGCTTTGTTATCATAGGGTTGATGATTTATGACC
TCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGA
AAACGAGCTACACCAAAATCTGCCACTTTCACGACA

consensusID : consensus_6536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [AAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCTCGTC]

[-] EMBL CB096297             [AAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCTCGTC]




>consensus_6536#1
AAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGT
TGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACC
CCCCTTGTCTCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6536#0      TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAA 60
consensus_6536#1      --------------------------------------------------AAACATCCAA 10
                                                                        **********

consensus_6536#0      TCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAGGAAGAGG-CGTTGATATATCA 119
consensus_6536#1      TCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCA 70
                      ************** ********** ************* *  *** *************

consensus_6536#0      AGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAGACCGAAAAAATTA 179
consensus_6536#1      AGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCT 130
                      ****************************** *******************       *  

consensus_6536#0      GGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTA 239
consensus_6536#1      CGTC-------------------------------------------------------- 134
                       * *                                                        

consensus_6536#0      CGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGA 299
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      ACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTG 359
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGC 419
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAA 479
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      GTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACC 539
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TACAGCTGCTTGGAGAGGGGTCATGGTATTATAAGGGATCTTGGACGTTATGAGCTCCCA 599
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      AAGCACAATAGCAAAACTGAACACATCAGCTTTGTTATCATAGGGTTGATGATTTATGAC 659
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      CTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTG 719
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      AAAACGAGCTACACCAAAATCTGCCACTTTCACGACA 756
consensus_6536#1      -------------------------------------