cluster # 6537

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Oryza sativa
cluster # 6537 cluster # 6537 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6537#0 length = 431 sequences # 3

consensus_6537#1 length = 254 sequences # 1

consensusID : consensus_6537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 431
fasta sequence

                              [CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGATTTTCAGAGAGCAGGAATTCTTCTGACATTGATAGATTGTTCTTCGGAGCTTTTCTCCCTGCCGACCACCGCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGTCATTTTTGGATGCTGCTTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTGCCCATATAGCATGAACATGACGGAACCATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCCGA-CCAGGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGTTTGGACTCCAAATTCATCAGTACTTGTAGTACTTTAC]

[+] EMBL CB096780             [CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGA TTTCAGAGAGCAGGAATTCTTCTGACATTGATAGATTGTTCTTCGGAGCTTTTCCCCCTGCCGACCACCGCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGTCATTTTTGGATGCTGCTTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTGCCCATATAGCATGAACATGACGGAACCATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCCGACCCAGGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGTTTGGACTCCAAATTCATCAGTACTTGTAGTACTTTAC]
[+] EMBL CA764083             [CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGATTTTCAGAGAGCAGGAATTCTTCTGACATTGATAGATTGTTCTTCGGAGCTTTTCTCCCTGCCGACCACCGCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGTCATTTTTGGATGCTGCTTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTGCCCATATAGCATGAACATGACGGAACCATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCCGA CCAGGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGNTTGGACTCCAAATTCATCAGTACTTGTAGTACTTT  ]
[+] EMBL CB096982             [CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGATTTTCAGAGAGCAGGAATTCTTCTGACATTGATAGATTGTTCTTCGGAGCTTTTCTCCCTGCCGACCACCGCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGTCATTTTTGGATGCTGCTTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTGCCCATATAGCATGAACATGACGGAACCATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCCGA CCAGGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGTTTGGACTCCAAAaa                       ]




>consensus_6537#0
CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGATTTTCAGAGA
GCAGGAATTCTTCTGACATTGATAGATTGTTCTTCGGAGCTTTTCTCCCTGCCGACCACC
GCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGTCA
TTTTTGGATGCTGCTTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATGCAAG
CCAATTTTGCGCTGTAAATTACCTGTACATAGTGCCCATATAGCATGAACATGACGGAAC
CATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCCGACCA
GGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGTTTGGACTCCAAATTCATCAGTACTTG
TAGTACTTTAC

consensusID : consensus_6537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [CTTTCCGGGGNAGGCCTTTTCCGGNCCCACGTTGCCCGGATCCACCCCGGTCCAAATGTCCTGGATATGTTGACCGATAGATCCCGAGAGCACAGACAAACCCAGANTTTAGGACGACATAGGTCAATTCTTTGGATGCGTGCATTGTGTCTTTTGCCTAGTTCAGAGTTGGTGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTCTCCCATATAGCATGAACATGACGGAACCAA]

[+] EMBL BQ908366             [CTTTCCGGGGNAGGCCTTTTCCGGNCCCACGTTGCCCGGATCCACCCCGGTCCAAATGTCCTGGATATGTTGACCGATAGATCCCGAGAGCACAGACAAACCCAGANTTTAGGACGACATAGGTCAATTCTTTGGATGCGTGCATTGTGTCTTTTGCCTAGTTCAGAGTTGGTGCTTGTAGATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTCTCCCATATAGCATGAACATGACGGAACCAA]




>consensus_6537#1
CTTTCCGGGGNAGGCCTTTTCCGGNCCCACGTTGCCCGGATCCACCCCGGTCCAAATGTC
CTGGATATGTTGACCGATAGATCCCGAGAGCACAGACAAACCCAGANTTTAGGACGACAT
AGGTCAATTCTTTGGATGCGTGCATTGTGTCTTTTGCCTAGTTCAGAGTTGGTGCTTGTA
GATATGCAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTCTCCCATATAGCATGAA
CATGACGGAACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6537#0      CCATGGAGGCACTTGGATTTTGAGACTCTATAAGCTAACATAGCAAGTGATTTTCAGAGA 60
consensus_6537#1      -------------------------------------------------CTTTCCGGGGN 11
                                                                        *** * * * 

consensus_6537#0      GCAGGAATTCT--TCTGACATTGATAGATTGTTCTTCGGAGCTTTTCTCCCTGCCGACCA 118
consensus_6537#1      AGGCCTTTTCCGGNCCCACGTTGCCCGGATCCACCCCGGTCCAAATGTCCTGGATA--TG 69
                             ***    *  ** ***   *  *   *  ***  *   * ***  *       

consensus_6537#0      CCGCCCAATCTGGATGTGACAAAACCAAACAAGATAACCCATTTAGACAACATAGAAGGT 178
consensus_6537#1      TTGACCGAT--AGATCCCGAGAGCACAGACAAACCCAGANTTTAGGACGACATAGGTCAA 127
                        * ** **   ***      *   ** ****    *    **  *** ******     

consensus_6537#0      CATTTTTGGATGC-TGC-TTGTGTCCTTTGCCTAGTTCAGAGATGATGCTTGTAGATATG 236
consensus_6537#1      T-TCTTTGGATGCGTGCATTGTGTCTTTTGCCTAGTTCAGAGTTGGTGCTTGTAGATATG 186
                        * ********* *** ******* **************** ** **************

consensus_6537#0      CAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTG-CCCATATAGCATGAACATGAC 295
consensus_6537#1      CAAGCCAATTTTGCGCTGTAAATTACCTGTACATAGTCTCCCATATAGCATGAACATGAC 246
                      *************************************  *********************

consensus_6537#0      GGAACCATACACATGCTTGTCCATGTCCAAAATGAAAAAAAAGGACGTGGCTCATCTTCC 355
consensus_6537#1      GGAACCAA---------------------------------------------------- 254
                      *******                                                     

consensus_6537#0      GACCAGGGTGAAAGCTTGATGCAATGTAGCTCCTCTTGTTTGGACTCCAAATTCATCAGT 415
consensus_6537#1      ------------------------------------------------------------
                                                                                  

consensus_6537#0      ACTTGTAGTACTTTAC 431
consensus_6537#1      ----------------