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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1216 fasta sequence
[GCTAGAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAACCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTCATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCGAGGTCTGTACACTCCATAAACCAACCTCTCCTCCTCCCATAACGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTCCGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAGGAGCAACTTGCTTTCTATTTACTTCGGATGCTAAGATTGTTCATCTCAAATTGCTAATACATTTCGCATAAAGAAATTGCTAATACATGCCTCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACAACACAATATCTACGGATTTCTTCTTGGAAGGGATCACATTCAGAATTGTCATGTTGATGCAACCTTTAGATAGCGGAGGACCACACAAATCATTATTCCCCAGAAATGAGCTGTTGGTGAATGTCAAGAAATGAAGTGATTCAGATAGATCCAAAGCTTCCAGCTGCTTCAGCCCACCAAGTTGAGATGGAATTGGCCCAGTGAGGAAGTTATGTGACATATTTATCCCATGAGTTAAAACAAGTTCCCCAACAATTTCTGGGATGCTACCATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATGTGAGTGAGGCTTTATATCTATATACTAGTCCTACACTTGGCACAGCATGATCCATGACCAATGATGTATTTGAGTCTATATGTAGCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACCAGAGAAGTTATTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATG]
[+] EMBL AK072599 [GCTAGAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAACCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTCATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCGAGGTCTGTACACTCCATAAACCAACCTCTCCTCCTCCCATAACGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTCCGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAGGAGCAACTTGCTTTCTATTTACTTCGGATGCTAAGATTGTTCATCTCAAATTGCTAATACATTTCGCATAAAGAAATTGCTAATACATGCCTCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACAACACAATATCTACGGATTTCTTCTTGGAAGGGATCACATTCAGAATTGTCATGTTGATGCAACCTTTAGATAGCGGAGGACCACACAAATCATTATTCCCCAGAAATGAGCTGTTGGTGAATGTCAAGAAATGAAGTGATTCAGATAGATCCAAAGCTTCCAGCTGCTTCAGCCCACCAAGTTGAGATGGAATTGGCCCAGTGAGGAAGTTATGTGACATATTTATCCCATGAGTTAAAACAAGTTCCCCAACAATTTCTGGGATGCTACCATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATGTGAGTGAGGCTTTATATCTATATACTAGTCCTACACTTGGCACAGCATGATCCATGACCAATGATGTATTTGAGTCTATATGTAGCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACCAGAGAAGTTATTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATG]
consensusID : consensus_6539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence
[GAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAACCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTCATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCGAGGTCTGTACACTCCATAAACCAACCTCTCCTCCTCCCATAACGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTCCGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAGGAGCAACTTGCTTTCTATTTACTTCGGATGCTAAGATTGTTCATCTCAAATTGCTAATACATTTCGCATAAAGAAATTGCTAATACATGCCTCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGGTGTGCTCCGAACCTCACTGCCAAAGCAAAATTCTATTGTTTTCACTAGTAAGCAAGTGTTACCTATAAATCACACATGCCAACTCGTTGATTCAGAACATCACTAGTATGTAATGTAAACTCTGTATATCAGTATATGATGTGTGCATCCTACTGGCTTGTGTAACTCTAAAGTAAATAAATATAACACCATTATCACCCATACTT]
[+] EMBL AK063153 [GAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGGCGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAACCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTCATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCGAGGTCTGTACACTCCATAAACCAACCTCTCCTCCTCCCATAACGCAGCGTTGCCGGATCTACGCCCTCCAGAGTCTGAACCCCTCCGAATCCTCTCCGTTGCGTGTCTCTGGGGTAAAGTAGGCTATGGAGGAGCAACTTGCTTTCTATTTACTTCGGATGCTAAGATTGTTCATCTCAAATTGCTAATACATTTCGCATAAAGAAATTGCTAATACATGCCTCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATTGCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGCTCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGGTGTGCTCCGAACCTCACTGCCAAAGCAAAATTCTATTGTTTTCACTAGTAAGCAAGTGTTACCTATAAATCACACATGCCAACTCGTTGATTCAGAACATCACTAGTATGTAATGTAAACTCTGTATATCAGTATATGATGTGTGCATCCTACTGGCTTGTGTAACTCTAAAGTAAATAAATATAACACCATTATCACCCATACTT]
consensusID : consensus_6539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[CCCAAGTTTGAGGATGGAATTTGGCCCCAGTGNAGGAAGTTATGTGACCATATTTANCCCATGAGTTAAAACAGTTCCCCAACAATTTCTGGGATGCTNCCATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACCAGAGAAGTTATTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATGTGCTTTCTTCATCGGTGAGAGATTGAACGACATGTCCAAATAGCTTATTGGATTTCAGTACAAGCACTTGGAGTCTACGAAGTTTACTCATCCAGCATGGGAAAATGTCATTTATTTGATTGTTCCCAGCATCAAGGATCTCCAAATTTTGACAAGCAAGTAGGGATCTGGGTAGCTGTCCTTCAATCCTATTGCCACTAAAATATAGTGCATGAAATGAGCAGCCTTCCTTTATAGTATCTGGGATCTCCCCATCGAGTTGATTTGCATTTAGATTTAATATTTGTATTCCATTAACGTTCTCGATCAAACAAGATGGTATTGAGCCACTAAAGTTGTTGTTAGAGAGATCAAGGTATTGTAATTCAGTTGCAGTACAGAAAGATGGTGGGATTTCTCCGGAAAAAAAAAAAAAA]
[+] EMBL AU090648 [CCCAAGTTTGAGGATGGAATTTGGCCCCAGTGNAGGAAGTTATGTGACCATATTTANCCCATGAGTTAAAACAGTTCCCCAACAATTTCTGGGATGCTNCCATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACCAGAGAAGTTATTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATGTGCTTTCTTCATCGGTGAGAGATTGAACGACATGTCCAAATAGCTTATTGGATTTCAGTACAAGCACTTGGAGTCTACGAAGTTTACTCATCCAGCATGGGAAAATGTCATTTATTTGATTGTTCCCAGCATCAAGGATCTCCAAATTTTGACAAGCAAGTAGGGATCTGGGTAGCTGTCCTTCAATCCTATTGCCACTAAAATATAGTGCATGAAATGAGCAGCCTTCCTTTATAGTATCTGGGATCTCCCCATCGAGTTGATTTGCATTTAGATTTAATATTTGTATTCCATTAACGTTCTCGATCAAACAAGATGGTATTGAGCCACTAAAGTTGTTGTTAGAGAGATCAAGGTATTGTAATTCAGTTGCAGTACAGAAAGATGGTGGGATTTCTCCGGAAAAAAAAAAAAAA]
consensusID : consensus_6539#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[GGCCAGGAACCCGCGCCATTGCTCTTNTNAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTNATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCAANATTTTTTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACANCACAATATCTACGGATTTTTTCTTGGAAGGGATCACATTCAGATTTGTCATGTTGATGCAACCTTTAGATAGCGGNGGACCACACAANTCATTATTCCCCAGAAAATGAAGCTGTTGGTGAATGTCAAGAAATGAGGTGGTTCANCTGATT]
[+] EMBL C72071 [GGCCAGGAACCCGCGCCATTGCTCTTNTNAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGGTCGTCTTCCTCGTNATGGACCTTCTCTCCCTCCCATGGCGTCGCCCACCTCCAANATTTTTTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTCAGCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACANCACAATATCTACGGATTTTTTCTTGGAAGGGATCACATTCAGATTTGTCATGTTGATGCAACCTTTAGATAGCGGNGGACCACACAANTCATTATTCCCCAGAAAATGAAGCTGTTGGTGAATGTCAAGAAATGAGGTGGTTCANCTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6539#0 GCTAGAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGG 60
consensus_6539#1 ----GAGAGCGCGGGCCGATGGTTGAGCCGTCCAAGAGCGGCGGCGGCGCGGCGCTCCGG 56
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 --------------CCCAAGTTTGAGGATGGAATTTGGCCCCAGTGNAGGAAGTTATGTG 46
consensus_6539#0 CGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAA 120
consensus_6539#1 CGAGCGGCGGCCGGAGTCGCTCTCCCGGTTGGCGTTGTGTATGTGATAGAAGGCCAGGAA 116
consensus_6539#3 ---------------------------------------------------GGCCAGGAA 9
consensus_6539#2 ACCATATTTANCCCATGAGTTAAAACAGTTCCCCAACAATTTCTGGGATGCTNCCATTGA 106
*** *
consensus_6539#0 CCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGG 180
consensus_6539#1 CCCGCGCCATTGCTCTTCTCAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGG 176
consensus_6539#3 CCCGCGCCATTGCTCTTNTNAACAGGAGCAGGTGAGATCTCTGACCTGTCAACGGCAAGG 69
consensus_6539#2 AT-GCATTATTGGAGAAATCAATGAATACAAGGGTTCTTAGTATTTGAGCAAGTGTGGTG 165
** **** * ** ** * * * * *** * *
consensus_6539#0 TCGTCTTCCTCGT--CATGGACCTTCTCTCCCT----CCCATGGCGTCGCCCACCTC-CG 233
consensus_6539#1 TCGTCTTCCTCGT--CATGGACCTTCTCTCCCT----CCCATGGCGTCGCCCACCTC-CG 229
consensus_6539#3 TCGTCTTCCTCGT--NATGGACCTTCTCTCCCT----CCCATGGCGTCGCCCACCTC-CA 122
consensus_6539#2 TCATGACCTTTGTATCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACC 225
** * * * ** ** *** ** * * * * ** * * * ** * *
consensus_6539#0 AGGTCTGTACACTCCATAAAC--CAACCTCTCCTCC-TCCCATAACGCAGCGTTGCCGGA 290
consensus_6539#1 AGGTCTGTACACTCCATAAAC--CAACCTCTCCTCC-TCCCATAACGCAGCGTTGCCGGA 286
consensus_6539#3 ANATTTTTTTACTGAAGAAATAACAGAAGCAATCGA-TGGAATAACTCAACAACATCTCA 181
consensus_6539#2 AGAGAAGTTATTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATGTGCTTTC 285
* * * * * ** * ** **
consensus_6539#0 TCTACGCCCT-CCAGAGTCTGAACCCC--TCCGAATCCTCTCCGTTGCGTGTCTCTGGGG 347
consensus_6539#1 TCTACGCCCT-CCAGAGTCTGAACCCC--TCCGAATCCTCTCCGTTGCGTGTCTCTGGGG 343
consensus_6539#3 GCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACANCACAATATCTACG 241
consensus_6539#2 TTCATCGGTG---AGAGATTGAACGACATGTCCAAATAGCTT-ATTGGATTTCAGTACAA 341
* ** *** * * *
consensus_6539#0 TAAAGTAGGCTATGGAGGAGCAACTT---GCTTTCTATTTACTTCGGATGCTAA---GAT 401
consensus_6539#1 TAAAGTAGGCTATGGAGGAGCAACTT---GCTTTCTATTTACTTCGGATGCTAA---GAT 397
consensus_6539#3 GATTTTTTCTTGGAAGGGATCACATTCAGATTTGTCATGTTGATGCAACCTTTA---GAT 298
consensus_6539#2 GCACTTGGAGTCTACGAAGTTTACTC---ATCCAGCATGGGAAAATGTCATTTATTTGAT 398
* * * ** * * ***
consensus_6539#0 TGTT---CATCTCAAATTGCTAATACATTTCGCATA-AA--GAAATTGCTAATACATGCC 455
consensus_6539#1 TGTT---CATCTCAAATTGCTAATACATTTCGCATA-AA--GAAATTGCTAATACATGCC 451
consensus_6539#3 AGCGG--NGGACCACACAANTCAT-TATTCCCCAGA-AAATGAAGCTGTTGGTGAATGTC 354
consensus_6539#2 TGTTCCCAGCATCAAGGATCTCCAAATTTTGACAAGCAAGTAGGGATCTGGGTAGCTGTC 458
* ** * ** ** ** * * ** *
consensus_6539#0 TCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATT 515
consensus_6539#1 TCCAGATGCCTTTTTTTTCTCAAGTCATCCTACTGAGTTGGCGACTAGTAGGTGTTAATT 511
consensus_6539#3 AAGAAATGAGGTGGTTCANCTGATT----------------------------------- 379
consensus_6539#2 CTTCAATCCTATTGCCACTAAAATATAGTGCATGAAATGAGCAGCC--TTCCTTTATAGT 516
** * *
consensus_6539#0 GCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGC 575
consensus_6539#1 GCTGCTAGTTTTCCTACTGAACATACCTAACAATACTGTTATGGGTGAATTTTTGTAGGC 571
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ATCTGGGATCTCCCCATCGAGTTGATTTG-------CATTTAGATTTAATATTTGTATTC 569
consensus_6539#0 TCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTC 635
consensus_6539#1 TCAGATTTTCTTACTGAAGAAATAACAGAAGCAATCGATGGAATAACTCAACAACATCTC 631
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 CATTAACGTTCTCGATCAAACAAGATGGTATTGAGCCACTAAAGTTGTTGTTAGAGAGAT 629
consensus_6539#0 AGCAATGGCCAACCCAAGGCCGAATCCCAATCCAGAAAAGAGGAACAACACAATATCTAC 695
consensus_6539#1 AGGTGTG----CTCCGAACCTCACTGCCAAAGCAAAATTCTATTGTTTT-CACTAGTAAG 686
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 CAAGGTATTGTAATTCAGTTGCAGTACAGAAAGATGGTGGGATTTCTCCGGAAAAAAAAA 689
consensus_6539#0 GGATTTCTTCTTGGAAGGGATCACATTCAGAATTGTCATGTTGATGCAACCTT--TAGAT 753
consensus_6539#1 CAAGTGTTACCTATAAATCA-CACATGCCAACTCGTTGATTCAGAACATCACTAGTATGT 745
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 AAAAA------------------------------------------------------- 694
consensus_6539#0 AGCGGAGGACCACACAAATCATTATTCCCCAGAAATGAGCTGTTGGTGAATGTCAAGAAA 813
consensus_6539#1 AATGTAA-ACTCTGTATATCAGTATATGATGTGTGCATCCTACTGGCTTGTGT--AACTC 802
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 TGAAGTGATTCAGATAGATCCAAAGCTTCCAGCTGCTTCAGCCCACCAAGTTGAGATGGA 873
consensus_6539#1 TAAAGTAA-----ATAAATATAACACCATTATCACCCATACTT----------------- 840
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 ATTGGCCCAGTGAGGAAGTTATGTGACATATTTATCCCATGAGTTAAAACAAGTTCCCCA 933
consensus_6539#1 ------------------------------------------------------------
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 ACAATTTCTGGGATGCTACCATTGAATGCATTATTGGAGAAATCAATGAATACAAGGGTT 993
consensus_6539#1 ------------------------------------------------------------
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 CTTAGTATTTGAGCAAGTGTGGTGTCATGACCTTTGTATGTGAGTGAGGCTTTATATCTA 1053
consensus_6539#1 ------------------------------------------------------------
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 TATACTAGTCCTACACTTGGCACAGCATGATCCATGACCAATGATGTATTTGAGTCTATA 1113
consensus_6539#1 ------------------------------------------------------------
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 TGTAGCATCGACTCCAACTTCTTAAACCACTTGTCTTTGGGCAACGGACCAGAGAAGTTA 1173
consensus_6539#1 ------------------------------------------------------------
consensus_6539#3 ------------------------------------------------------------
consensus_6539#2 ------------------------------------------------------------
consensus_6539#0 TTTGAGGATATGTCAATAATTATTGCATTTGGAAATGCACATG 1216
consensus_6539#1 -------------------------------------------
consensus_6539#3 -------------------------------------------
consensus_6539#2 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||