These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1636 fasta sequence [TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCCCGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCGCCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCACTGCGCCAACACTCCGCTCCCAACCTCTCAGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATTGCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGATTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGTGCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATTTGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGCAGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGGGATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAACCTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGTGGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACATGAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCATCTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAGGAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATC-ACAGCTCCCCGGATT-CCT-CTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTTCCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCTCATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATCTCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACATTTTGAATGATAAAAAAA] [+] EMBL AK102870 [TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCCCGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCGCCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCACTGCGCCAACACTCCGCTCCCAACCTCTCAGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATTGCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGATTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGTGCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATTTGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGCAGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGGGATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAACCTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGTGGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACATGAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCATCTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAGGAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATC ACAGCTCCCCGGATT CCT CTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCT ] [+] EMBL BI807226 [ GCTGTGGATGGTGATCAACA CTCCCCGGATTGCCTGCTTTAGAGGTTGAAGACNCATCGGTAG AGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCA CGGAANCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCT CCTTGGGGTT ] [+] EMBL AU173167 [ ATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTTCCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCTCATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATCTCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACATTTTGAATGATAAAAAAA] consensusID : consensus_6544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TCTCCGAGTTACCTTCCTGCTTAACCCCTGAACCCTAACCCTAACCCTAACCCCCATCGCCGCCTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTG] [+] EMBL OSR15241B [TCTCCGAGTTACCTTCCTGCTTAACCCCTGAACCCTAACCCTAACCCTAACCCCCATCGCCGCCTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6544#0 TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCC 60 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCG 120 consensus_6544#1 ---------------------------------------------------TCTCCGAGT 9 * ** consensus_6544#0 CCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCAC 180 consensus_6544#1 TACCTTCCTGCTTAACCCCTGAACC----CTAACCCTAAC--CCTAACCCCCATCGCCGC 63 * *** ** ** * * ** * * ** * ****** * **** * consensus_6544#0 TGCGCCAACACTCCGCTCCCAACCTCTCAG-TACTGTGGGAACCACCTCCCGGATTCCGC 239 consensus_6544#1 ----------CTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGC 113 **** * *** * ***** ***************************** consensus_6544#0 CTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACAC 299 consensus_6544#1 CTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACAC 173 ************************************************************ consensus_6544#0 CGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGC 359 consensus_6544#1 CGTG-TCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGC 232 **** ******************************************************* consensus_6544#0 GGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGG 419 consensus_6544#1 GGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGG 292 ************* ********************************************** consensus_6544#0 TGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATT 479 consensus_6544#1 TG---------------------------------------------------------- 294 ** consensus_6544#0 GCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGA 539 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 TTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGT 599 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATT 659 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 TGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGC 719 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGG 779 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAAC 839 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGT 899 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACAT 959 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCAT 1019 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAG 1079 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 GAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATCACAGCTCC 1139 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CCGGATTCCTCTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAG 1199 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAG 1259 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTT 1319 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAG 1379 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 AATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTT 1439 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCT 1499 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 CATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATC 1559 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 TCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACAT 1619 consensus_6544#1 ------------------------------------------------------------ consensus_6544#0 TTTGAATGATAAAAAAA 1636 consensus_6544#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||