cluster # 6544

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Oryza sativa
cluster # 6544 cluster # 6544 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6544#0 length = 1636 sequences # 3

consensus_6544#1 length = 294 sequences # 1

consensusID : consensus_6544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1636
fasta sequence

                              [TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCCCGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCGCCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCACTGCGCCAACACTCCGCTCCCAACCTCTCAGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATTGCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGATTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGTGCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATTTGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGCAGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGGGATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAACCTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGTGGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACATGAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCATCTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAGGAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATC-ACAGCTCCCCGGATT-CCT-CTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTTCCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCTCATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATCTCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACATTTTGAATGATAAAAAAA]

[+] EMBL AK102870             [TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCCCGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCGCCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCACTGCGCCAACACTCCGCTCCCAACCTCTCAGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATTGCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGATTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGTGCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATTTGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGCAGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGGGATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAACCTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGTGGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACATGAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCATCTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAGGAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATC ACAGCTCCCCGGATT CCT CTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCT                                                                                                                                                                                                             ]
[+] EMBL BI807226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCTGTGGATGGTGATCAACA CTCCCCGGATTGCCTGCTTTAGAGGTTGAAGACNCATCGGTAG AGACAGGTGCGGAAAAGCAGAGAAGTCTGATGTGGAGGTCA CGGAANCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCT CCTTGGGGTT                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU173167             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGAGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTAGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGAATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTTCCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCTCATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATCTCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACATTTTGAATGATAAAAAAA]




>consensus_6544#0
TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCC
CGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCG
CCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCAC
TGCGCCAACACTCCGCTCCCAACCTCTCAGTACTGTGGGAACCACCTCCCGGATTCCGCC
TCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACC
GTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCG
GCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGT
GGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATTG
CGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGAT
TCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGTG
CCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATTT
GGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGCA
GTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGGG
ATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAACC
TTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGTG
GACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACATG
AAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCATC
TGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAGG
AAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATCACAGCTCCC
CGGATTCCTCTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAGA
AGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAGA
GAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTTA
GAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAGA
ATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTTC
CATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCTC
ATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATCT
CCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACATT
TTGAATGATAAAAAAA

consensusID : consensus_6544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TCTCCGAGTTACCTTCCTGCTTAACCCCTGAACCCTAACCCTAACCCTAACCCCCATCGCCGCCTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTG]

[+] EMBL OSR15241B            [TCTCCGAGTTACCTTCCTGCTTAACCCCTGAACCCTAACCCTAACCCTAACCCCCATCGCCGCCTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTG]




>consensus_6544#1
TCTCCGAGTTACCTTCCTGCTTAACCCCTGAACCCTAACCCTAACCCTAACCCCCATCGC
CGCCTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGCCTCCGAT
GCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACACCGTGTCG
AGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGCGGCGCTCG
CAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6544#0      TTCGGTTGTGTTCACACCGGGGGTCTGCACTTCTGCTCCCTCTCCGCCTCCGGCGTCTCC 60
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CGCTCGCCGCCGCCGCTGTCAGAGATGGGCCGTGCTCCGGCGAAACGGAAGCCCTCGTCG 120
consensus_6544#1      ---------------------------------------------------TCTCCGAGT 9
                                                                          *  **   

consensus_6544#0      CCGCCGCCTCCTCCGCCTCCGGGCCGTTGCCACTTCTGGCTCCCTAACAAGCGCCGCCAC 180
consensus_6544#1      TACCTTCCTGCTTAACCCCTGAACC----CTAACCCTAAC--CCTAACCCCCATCGCCGC 63
                         *  *** **   ** * *  **    * *   **  *  ******   *  **** *

consensus_6544#0      TGCGCCAACACTCCGCTCCCAACCTCTCAG-TACTGTGGGAACCACCTCCCGGATTCCGC 239
consensus_6544#1      ----------CTCCTCCCCCTCCTCCTCAGGTACTGTGGGAACCACCTCCCGGATTCCGC 113
                                **** * ***  *  ***** *****************************

consensus_6544#0      CTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACAC 299
consensus_6544#1      CTCCGATGCCGGTGCGCCCTTCCGCCGCCTTGTCCCCTGCCCCGTCGACCCCTCGCACAC 173
                      ************************************************************

consensus_6544#0      CGTGCTCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGC 359
consensus_6544#1      CGTG-TCGAGGAGAACCTGGAGGCGCACGTCGGCAAGTGCCCCCTCAAGAAGCAGGCCGC 232
                      **** *******************************************************

consensus_6544#0      GGCGCTCGCAGCGCAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGG 419
consensus_6544#1      GGCGCTCGCAGCGAAGCCGTTCTACTCCAAGGGCATCAACTCCGGTGGGGGAGAAGGCGG 292
                      ************* **********************************************

consensus_6544#0      TGGGGGTGTCACCTCGGCCGCTAAGCGTGCATTGGTGCACAAGCTCACCAAGGATGAATT 479
consensus_6544#1      TG---------------------------------------------------------- 294
                      **                                                          

consensus_6544#0      GCGCGCCTTGATTGAGAAGATCAAGTTGGCGCATGCGTCGGCGGCCATGGCAATGCGTGA 539
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      TTCATTTCTTGTTACAGATGCTTGCGACAATTGGATGAGGAACCAGGTTGATAGGAAGGT 599
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GCCATACCAGGAAAAGCATGTCACGCAGCAGGCATCCATCATTGGCAATATGGAGGCATT 659
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      TGGTTTGCTGCAGAAGGGAGGTGAGGTGGCGGAGGAGAATGGTGTGAAAAATGCTCCGGC 719
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AGTGGTGGAATTCGGAGCAGGGAGAGGGTACTTGACTCAGATGCTGGCAGACTGCTACGG 779
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GATTAGGAATGTTTTCTTGGTTGAGAGAAGATCATACAAGCTCAAGTTGAAGATTTGAAC 839
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CTTCAAGGAATAGAGGCATTGAGTGGACTTCATTATCTAGCAATTGGAAAGCATCTATGT 899
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GGACCTGCAACAGATATGACCATGATGTGCTGCCTTCATGAACGGTATAACCAGGCACAT 959
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GAAAAAGAATATGGCAAAAGCAATCTATGTGGCCTTGCTTTGGCCACCTGCTGCCACCAT 1019
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CTGTGCCAATGGAATCACTATGCAAATAAGACATTCCTCTCAGGGTTAGGGATTACAGAG 1079
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      GAAGATTTCCATACCATGACTTGGTTTAGCAGCTGGGCTGTGGATGGTGATCACAGCTCC 1139
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CCGGATTCCTCTTTAGAGGTTGAAGACTCATCTGTAGAAGACAGGTGCGGAAAAGCAGAG 1199
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AAGTCTGATGTGGAGGTCAGCGGAATCGATAGACTCATCCGAAGTATACCAGCAGGGGAG 1259
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AGAGCTGCCTTGGGGTTTATGTGTAAAGATATTATTGATACTGGTAGGCTATTATGGCTT 1319
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AGAGAGAAGGGTTTAGATGCAGATCTTGTAAGCTACGTCCCATCAAATATTTCTCCAGAG 1379
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      AATCACTTACTCATTGCAAAATGTACGTCTTTATCAGGATGAAAAAGAAGCTTACATGTT 1439
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CCATTTTGAACCTGATTAAGTTCGCAAATTTTGGTTGTATAATTTATGACATATGGTGCT 1499
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      CATCAGTTCAGTGAAAAATTAGGTGTGCAAGCCAAAAACATCCGGAGAGCATGCTATATC 1559
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      TCCATGTGAAATTTCAATATGAGAGCAGTCTCCATGTGAAATTCCAGTATTGAATCACAT 1619
consensus_6544#1      ------------------------------------------------------------
                                                                                  

consensus_6544#0      TTTGAATGATAAAAAAA 1636
consensus_6544#1      -----------------