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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1270 fasta sequence
[CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGG-GGAGACCTCGCCGGCGGCGACAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGCAAAAAGTTCCCTGCATCAAC-TGTTATACCTCCTTGTT-TGACTACTGGCTCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTTAAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCGTTCTCGGCTT]
[-] EMBL BI809947 [CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGG GGAGACCTCGCCGGCGGCGACAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGCAAAAAGTTCCCTGCATCAACGTGTTATACCTCCTTGTTATGACTACTGGCTCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAACAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTGGATACAAGCATTTCAAATGATATAGGCGAGG TTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAAT ]
[+] EMBL AK069895 [ ttGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGGCGGAGACCTCGCCGGCGGCGAGAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAGTTGGTTACACATAAAAAGGAACAAGTCTTGGATGAAATTTTCTGCCGGAAGCTCGCAGAAGAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTAAAGCACTACAGGCTGTGCAGGTTCAAGAATGGTTCCGTCAAAAGTTCCCTGCATCAAC TGTTATACCTCCTTGTT TGCCTACTGGCTCTGAAGAAAAGGCTTTAGCCTCCCAAGCAAGTGCACGGGTTTCTGAAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTTAAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCGTTCTCGGCTT]
[+] EMBL BE607451 [ AAGAAAAGCCTCCATCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTTTCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTCGAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGGAAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACACGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATG ]
consensusID : consensus_6551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[TCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTTAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCG]
[-] EMBL CF338139 [TCAAGGATTTGGGGCTGAAGAGGATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCAGAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAAGCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGGTGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTGAGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACACATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTAGTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCCCCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCTGTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGATTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTTAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6551#0 CTAGAACGGGAGGAGGGCGTCTTCCCCGTTCTTCCGGCGGGGAGACCTCGCCGGCGGCGA 60
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 CAAATGGAGCGGCGATCGAGCGTTCGCTTCGCGCCATCCGAGATTGCAAGGATGGAGAAG 120
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 TTGGTTACACATAAAAAGGAACAAGTCTTGGATGACATTTTCTGCCGGAAGCTCGCAGAA 180
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 GAATTTAATTGTTCTCCAGGCCGAGTTGGAAGTACAGCACTACAGGCTGTGCAGGTTCAA 240
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 GAATGGTTCCGCAAAAAGTTCCCTGCATCAACTGTTATACCTCCTTGTTTGACTACTGGC 300
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 TCTGAAGAACAGGCTTTAGCCTCCCAAGCAAGTGCACCGGTTTCTGAAGAAAAGCCTCCA 360
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 TCATCTGAAGAAAATGCTTTAGCTGTTGATACAAGCATTTCAAATGATATAGGCGAGGTT 420
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 TCGCCGGATTTACCTATAGACAACATAGATAAGCTTCCTGAAATTGAAGACATGCAGTTC 480
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 GAGGCTAGGTCTTCAAAGGATTTTGCTTGGTATGATATCGCCACTTTCTTAGCATACAGG 540
consensus_6551#1 ------------------------------------------------------------
consensus_6551#0 AAGTTAAGTTCTGGTGAATTTGAAGTCCGAGTGAGATTTCAAGGATTTGGGGCTGAAGAG 600
consensus_6551#1 --------------------------------------TCAAGGATTTGGGGCTGAAGAG 22
**********************
consensus_6551#0 GATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCA 660
consensus_6551#1 GATGAATGGATCAATGTCCGGAAGGCTATCCGCCTGCAATCCATCCCGTTGGAATCATCA 82
************************************************************
consensus_6551#0 GAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAA 720
consensus_6551#1 GAATGCAAACTCATCAGGGAAGGAGACCTTGTCCTCTGTTTCAAGGAGAGCAATGATGAA 142
************************************************************
consensus_6551#0 GCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGG 780
consensus_6551#1 GCATTGCATTTCGATGCGCATGTTCTGGAAATCCAGCGGAAACAACATGATATAAGGGGG 202
************************************************************
consensus_6551#0 TGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTG 840
consensus_6551#1 TGCAGATGTGTCTTCCTTGTCGAATACGACCATGATGGAACCCAGGAGAGGGTGAACCTG 262
************************************************************
consensus_6551#0 AGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACAC 900
consensus_6551#1 AGAAGATTGTCCCGGCGGCCAAAGCACTCCTGATGGCTTGTGTCAAACTGTCAAATACAC 322
************************************************************
consensus_6551#0 ATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTA 960
consensus_6551#1 ATCTGCCTCTTGCCTCTTGCCGTATGCGCTAATGCTGAACTAACAGGAACTCCGAACCTA 382
************************************************************
consensus_6551#0 GTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCC 1020
consensus_6551#1 GTTAGGGGCTAAACTTTTTGCTTGGTTCAGAACTCATTGATGAGTACAGTAACCCCCCCC 442
************************************************************
consensus_6551#0 CCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCT 1080
consensus_6551#1 CCCCCCCGGTGATGGTACATTTCAACCCTCTTTGGCAAATTCCGAACCTAGTTAGGGGCT 502
************************************************************
consensus_6551#0 GTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGA 1140
consensus_6551#1 GTTCGTGGGGCTGCTTGATGGCCAAATTTTGTGCAGTAATTTGGGAGGAAAAGAGGGGGA 562
************************************************************
consensus_6551#0 TTAGTCAAGACTGAACTGAAGAGCATATTACCTCCAAGAACTAACAGGATTGGACTTTTT 1200
consensus_6551#1 TTAGTCAAGACTGAACTGAAGAGCATACTACCTCCAAGAACTAACAGGATTGGACTTTTT 622
*************************** ********************************
consensus_6551#0 AAATGCGTTGTGTTGGGTGTGAGATTCCACATTTCCATGGAAAATTCGTAATGCTCAGCG 1260
consensus_6551#1 AAAAAAA-------AAAAAAAAAAAAAAACACTGTCATGCCG------------------ 657
*** * * *** * ****
consensus_6551#0 TTCTCGGCTT 1270
consensus_6551#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||