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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1313 fasta sequence
[CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA---GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC-ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC-AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA]
[+] EMBL AK064721 [CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGTGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACAATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACAAAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTT AACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACaagc ]
[+] EMBL BI805607 [ AGCACAA GCACAGATCTTG ACCAGATCTATACC ATATTTC AACAT CAGGTGCAGGAG ACATCCCTCTTTTATGTC AACTAGGGATAATATACTNGCAGTCCTGAAGGACAGGATAGGCGATGTTCCTGAGATAATGA GCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGNGCAACAGTTTGCTCAACC AATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTC GACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA]
[+] EMBL BI806075 [ AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCA CAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCCATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAAaaaa ]
consensusID : consensus_6561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA]
[+] EMBL BQ907997 [TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6561#0 CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATC 60
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAAT 120
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGA 180
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGAC 240
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTG 300
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTC 360
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGAT 420
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGAT 480
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAG 540
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 TCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCA 600
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGAT 660
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAAT 720
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 GCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATC 780
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGAGATAGGCGATGTT 840
consensus_6561#1 ------------------------------------------------------------
consensus_6561#0 CCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAA-GTTGAATGAAGAACTGGCTAA 899
consensus_6561#1 -----------------------------TTGTGTGATCGATTANAGAGGATTTNTCGGT 31
* *** * * * * ** ** * *
consensus_6561#0 CTCTA-TGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATC 958
consensus_6561#1 TTGTACTGTTGTTNGGCCACTNGTATTTN-GGCTTGTGTGG-GGTGCGCT-GATTA---T 85
* ** ***** * * ** * **** ** *** * *
consensus_6561#0 AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAG 1018
consensus_6561#1 GATTGTGCCC--AGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTG-------AA 136
**** ** **** * * *** * *** * * ***** ** *
consensus_6561#0 ATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACATTCTATACC 1078
consensus_6561#1 ATTGCCACGGCCCACTGGTGAACACNATGTGCTGA-----------TGACCCTTGGTTCT 185
*** * * * * *** * * * * * * ** * * *
consensus_6561#0 TTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACA--AGCCAGCAGT-TTCAG 1135
consensus_6561#1 ATGTTGTTGCACGCTGCGATGAGTG-AGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAG 244
** * * * * * *** * **************** ********** *****
consensus_6561#0 TG-AAACAAGTTCGTAGCCCTCTAGTCCTTGTA----GAAAAAAAACATAGGGG---TTA 1187
consensus_6561#1 TGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGA 304
** *********************** * *** * ********** *** * *
consensus_6561#0 AACT-TCTGTACA-GTGTC--GAAAGAAAT-AGCATC---TTTTCTGTTTCAGTTATGTT 1239
consensus_6561#1 AACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTT 364
**** ******** *** ********* ***** *** ****************
consensus_6561#0 TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTC 1299
consensus_6561#1 TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTC 424
************************************************* * ********
consensus_6561#0 TTAATTTGCCAAAA 1313
consensus_6561#1 TTTA---AAAAAAA 435
** * ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||