These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence [CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCGGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAACGTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF339118 [CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCAGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAAC ] [+] EMBL AK107731 [ CAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCGGCGCCGGAGAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGG ] [+] EMBL AU093214 [ CGNCGGCGCCGGACAACGGCCCGGTGGGGTGCCTGGCGTCGNCGGTGNAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAACGTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [GNGNCACGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT] [+] EMBL OSC2544A [GNGNCACGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6565#0 CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCA 60 consensus_6565#1 ------------------------------------------------------GNGNCA 6 * * ** consensus_6565#0 -GCGGCGGCGGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCC 119 consensus_6565#1 CGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCC 66 ************* * ****** * ***************************** consensus_6565#0 GATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCT 179 consensus_6565#1 GATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCT 126 ******************************** *************************** consensus_6565#0 AGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCG-CCGTCTCGCTGCCGCCGCCGATGC 238 consensus_6565#1 AGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT- 185 ******************* ****** * **** * ****** * ***** ** **** consensus_6565#0 CGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTT 298 consensus_6565#1 ------------------------------------------------------------ consensus_6565#0 GTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGG 358 consensus_6565#1 ------------------------------------------------------------ consensus_6565#0 TCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAG 418 consensus_6565#1 ------------------------------------------------------------ consensus_6565#0 GTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATA 478 consensus_6565#1 ------------------------------------------------------------ consensus_6565#0 TTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAAC 538 consensus_6565#1 ------------------------------------------------------------ consensus_6565#0 GTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA 576 consensus_6565#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||