cluster # 6569

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Oryza sativa
cluster # 6569 cluster # 6569 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6569#0 length = 652 sequences # 1

consensus_6569#1 length = 626 sequences # 2
consensus_6569#2 length = 432 sequences # 1

consensusID : consensus_6569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [TGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCAATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGCGGAGGGTGGTG]

[+] EMBL CB627017             [TGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCAATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGCGGAGGGTGGTG]




>consensus_6569#0
TGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCAT
GTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACAT
ATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCA
CAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGC
AGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCA
TCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACA
GACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCT
GCTGTTGTGCACTCTGCCCAATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAG
ACTCCTGCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACT
GCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTT
GTCGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGCGGAGGGTGGTG

consensusID : consensus_6569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence

                              [AAGGATTGTTAGAAGCATTCATTCTCAACACACAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAAATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA]

[+] EMBL CB641081             [AAGGATTGTTAGAAGCATTCATTCTCAACACACAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAAATG                                           ]
[+] EMBL CB663166             [                                                        AACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA]




>consensus_6569#1
AAGGATTGTTAGAAGCATTCATTCTCAACACACAGCCCATGTAGGATGAGCTTATGAACC
AATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGA
TCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAA
GAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCC
TCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTC
TGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGA
GATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCA
ATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGC
TGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGC
TGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAAATGGATGTGGCTGTGGAGGT
GNGTGGTGGTGGTGCTCNTGGTTGCA

consensusID : consensus_6569#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTCATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGCCCCACGCGTCCGCCCACGCGTCCGCGG]

[-] EMBL BQ906744             [TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTCATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGCCCCACGCGTCCGCCCACGCGTCCGCGG]




>consensus_6569#2
TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTC
ATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAG
GATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCA
ATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGAT
CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG
AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT
CCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGCCCCACGCGTCCGCCC
ACGCGTCCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6569#0      ------------------------------------------------------------
consensus_6569#1      ------------------------------------------------------------
consensus_6569#2      TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTC 60
                                                                                  

consensus_6569#0      ---------------------------------------TGGCATCTCGTGATTTTAAAG 21
consensus_6569#1      ---------------------------------------------------------AAG 3
consensus_6569#2      ATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAG 120
                                                                               ***

consensus_6569#0      GATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCA 81
consensus_6569#1      GATTGTTAGAAGCATTCATTCTCAACACACA--GCCCATGTAGGATGAGCTTATGAACCA 61
consensus_6569#2      GATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCA 180
                      *******************************  ***************************

consensus_6569#0      ATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGAT 141
consensus_6569#1      ATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGAT 121
consensus_6569#2      ATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGAT 240
                      *********************** ************************************

consensus_6569#0      CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 201
consensus_6569#1      CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 181
consensus_6569#2      CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 300
                      ************************************************************

consensus_6569#0      AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 261
consensus_6569#1      AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 241
consensus_6569#2      AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 360
                      ************************************************************

consensus_6569#0      CCCATTTCAGTTATAGCTGGCCA-ATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTC 320
consensus_6569#1      CCCATTTCAGTTATAGCTGGCCA-ATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTC 300
consensus_6569#2      CCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGC-----CCCACGCGTC 415
                      *********************** *********************          *  **

consensus_6569#0      TGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGA 380
consensus_6569#1      TGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGA 360
consensus_6569#2      CGC-CCACGCGTCCGCGG------------------------------------------ 432
                       ** ***   *    *                                            

consensus_6569#0      GATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCA 440
consensus_6569#1      GATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCA 420
consensus_6569#2      ------------------------------------------------------------
                                                                                  

consensus_6569#0      ATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGG 500
consensus_6569#1      ATCGGTTG------------------------CAAGACAGACTCCT---GAGTCTGATGG 453
consensus_6569#2      ------------------------------------------------------------
                                                                                  

consensus_6569#0      TAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGA 560
consensus_6569#1      TAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGA 513
consensus_6569#2      ------------------------------------------------------------
                                                                                  

consensus_6569#0      ATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAAT 620
consensus_6569#1      ATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAAT 573
consensus_6569#2      ------------------------------------------------------------
                                                                                  

consensus_6569#0      GTTTGAGATGGATGTGGCTGCGGAGGGTGGTG--------------------- 652
consensus_6569#1      GTTTGAAATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA 626
consensus_6569#2      -----------------------------------------------------