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Oryza sativa
cluster # 6578 cluster # 6578       Sequences # 4       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6578#0 length = 2464 sequences # 2  
 consensus_6578#1 length = 727 sequences # 1  
consensus_6578#2 length = 664 sequences # 1  
consensusID : consensus_6578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2464
fasta sequence 
                              [TTGGCCACTCGACCAAGCCAGTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCAAATCCCGCGCCCGCCGGTACGAATCCCGCCGCCGCGCCGCGCCGCCATGTCCTCCTCCCGCGGGCCGCCATCTCCTCCGTCCCACCCGAACCCCATCGATCCCTTCGCCGCGGCGGCGGCGGCGGCGGCGGAGGCGGAAGGGGAGGCGGCGCCGCCGCCGCGAAACCCTATCATCCCCCGCGACCCCCCCTCGCCGGAGATGGAGGCCACCGCCGAGGCGCTCACCCGGGAGGAGGTTCTGCGCCGGCGGAGGCGCCGCGCCAAGCGCCTCGTCGACGTCTACCGGCGCCTCTACTGGACGCTCGGGGAGGAGCTGCGGGCGCGGCACCGGCAGTACGTCTGGGAGCTCGGCCGGAGCCCGCTCGAGGCCGAGCAGCCGCCGCCGCCGCCGCCGACCTCCGCCGCGCCCGGCCCCGGCGGGGACCTGGTGGTGGTCAGGCCGGTGTCCGCCACGGTGCCGAGGCGGAAGAAGTGCGGCTTCGCCGGCTGCAAGGTGCGGACCATGGCGATGGCCAGGTTCTGCCACTCCCACATCCTCTCCGACCCCAACCAAGTGCTCTACAAGGGCTGCGCCTATATCAGCAAGAGTGGCCCACAAGTTCAAATTACTTGCGGCAGACCCATCCTTAAAGCTTCAGTTCCCTCCCTCTGCAATTCTCATTTTCAAAAATGTCAGAAGTTAATTACACAAGGTTATAAGAAGTTTGGAGTTAACCCATCACCCACAGGCAAGGTCTCTCCAAATTTTGGTTTGTTGGTTGCTGAATGTGTTCGTCAGATCCAAGCCAAGCGGAGAGAATCACCAAGTTGAATGAGCCGTGTCACAACTCACAACTTTGTTGTTGCACAAATTTTATGAAATGGCAGGTATTATGAGGCTTACCAAGGCACTGATAACTTCTTTTGCCAGAATACTGCACCCACTCTTACTTGAACGAAATAAAATGAGGAAAATTCATAGATATATGTGAGTTTGAGTTTGAAGTGCATCTCTGGCAGGATTATTTCATGGGGGAATTGGAAGACGGTTAACTGCAGATGTCAAATGTATAGTTGATTGATTAAGTCAATGGAGTATCACCATGAGGATGCACGAATGAAATTCCCTTGGATAGCACCTTATATCTAGTAAAATGCTTTATCATGAGTCCAATGGGTTGCTGTTGCTGATCACCAGGGAGGGATGCCATTTAATTTTGCTGTTTTTGCTGGGAGGTTCAATGCTGACTGTATGCATAGCTGCTTGGTTCTTCATAATGAGTTGCAACTTGCAAGGCAGTATAGCTCATCACATTCTGAACTGGATTTCACACTGAATTAAGTTCATCCAACATGGGCCATATGTTCTTTGTGATTGTAGCCGGTGCAATTGCTGTGCTACTATTCAGCTTGGTGCCAGAAATGTTCTTTTTGTGAAGTAAATACCATTATCACTTTCCCCAAGTGGTGATTATGAACCTTGAATATATGCATGTACCTCACTTCCCTAGGTGGTGATTTCGTACATTGCTTATACGCCCATGCAGATGCAGAGGGAGCTGAAAGCCTGATGCAATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCACCTGCTGATGGAGGAGCCCCACCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCACCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCACAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGAACATTAATTTCTTGGCTACATATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATATCATGGGAATAGGACAAGAATGTCGGGTGGCAGATTTCTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGTGTTGCTTTTTCACTCTACTCTGCTTGGTTTCGATGCTTAGTTTAATGTTGTAAGGTAGTTACCAGTTGTAAATGACTGTCTATCGTTTTCTCATGTTAAATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCAAGCAGCGATATGTCCATCAGTCCATGTTCCGGCTCAACTAACCTTGCTTTATCGGATAGAACTTGTGGAAAGGGGAGGGATTTTACTTCTTCCGTTTCATTCTAGAATTTTCTATATTCATATTGA]

[+] EMBL AK101238             [TTGGCCACTCGACCAAGCCAGTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCCCAAATCCCGCGCCCGCCGGTACGAATCCCGCCGCCGCGCCGCGCCGCCATGTCCTCCTCCCGCGGGCCGCCATCTCCTCCGTCCCACCCGAACCCCATCGATCCCTTCGCCGCGGCGGCGGCGGCGGCGGCGGAGGCGGAAGGGGAGGCGGCGCCGCCGCCGCGAAACCCTATCATCCCCCGCGACCCCCCCTCGCCGGAGATGGAGGCCACCGCCGAGGCGCTCACCCGGGAGGAGGTTCTGCGCCGGCGGAGGCGCCGCGCCAAGCGCCTCGTCGACGTCTACCGGCGCCTCTACTGGACGCTCGGGGAGGAGCTGCGGGCGCGGCACCGGCAGTACGTCTGGGAGCTCGGCCGGAGCCCGCTCGAGGCCGAGCAGCCGCCGCCGCCGCCGCCGACCTCCGCCGCGCCCGGCCCCGGCGGGGACCTGGTGGTGGTCAGGCCGGTGTCCGCCACGGTGCCGAGGCGGAAGAAGTGCGGCTTCGCCGGCTGCAAGGTGCGGACCATGGCGATGGCCAGGTTCTGCCACTCCCACATCCTCTCCGACCCCAACCAAGTGCTCTACAAGGGCTGCGCCTATATCAGCAAGAGTGGCCCACAAGTTCAAATTACTTGCGGCAGACCCATCCTTAAAGCTTCAGTTCCCTCCCTCTGCAATTCTCATTTTCAAAAATGTCAGAAGTTAATTACACAAGGTTATAAGAAGTTTGGAGTTAACCCATCACCCACAGGCAAGGTCTCTCCAAATTTTGGTTTGTTGGTTGCTGAATGTGTTCGTCAGATCCAAGCCAAGCGGAGAGAATCACCAAGTTGAATGAGCCGTGTCACAACTCACAACTTTGTTGTTGCACAAATTTTATGAAATGGCAGGTATTATGAGGCTTACCAAGGCACTGATAACTTCTTTTGCCAGAATACTGCACCCACTCTTACTTGAACGAAATAAAATGAGGAAAATTCATAGATATATGTGAGTTTGAGTTTGAAGTGCATCTCTGGCAGGATTATTTCATGGGGGAATTGGAAGACGGTTAACTGCAGATGTCAAATGTATAGTTGATTGATTAAGTCAATGGAGTATCACCATGAGGATGCACGAATGAAATTCCCTTGGATAGCACCTTATATCTAGTAAAATGCTTTATCATGAGTCCAATGGGTTGCTGTTGCTGATCACCAGGGAGGGATGCCATTTAATTTTGCTGTTTTTGCTGGGAGGTTCAATGCTGACTGTATGCATAGCTGCTTGGTTCTTCATAATGAGTTGCAACTTGCAAGGCAGTATAGCTCATCACATTCTGAACTGGATTTCACACTGAATTAAGTTCATCCAACATGGGCCATATGTTCTTTGTGATTGTAGCCGGTGCAATTGCTGTGCTACTATTCAGCTTGGTGCCAGAAATGTTCTTTTTGTGAAGTAAATACCATTATCACTTTCCCCAAGTGGTGATTATGAACCTTGAATATATGCATGTACCTCACTTCCCTAGGTGGTGATTTCGTACATTGCTTATACGCCCATGCAGATGCAGAGGGAGCTGAAAGCCTGATGCAATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCACCTGCTGATGGAGGAGCCCCACCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCACCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCACAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGAACATTAATTTCTTGGCTACATATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATATCATGGGAATAGGACAAGAATGTCGGGTGGCAGATTTCTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGTGTTGCTTTTTCACTCTACTCTGCTTGGTTTCGATGCTTAGTTTAATGTTGTAAGGTAGTTACCAGTTGTAAATGACTGTCTATCGTTTTCTCATGTTAAATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCAAGCAGCGATATGTCCATCAGTCCAT                                                                                                     ]
[-] EMBL CK085080             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGTTTTGCACCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCACAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGAACATTAATTTCTTGGCTACATATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATATCATGGGAATAGGACAAGAATGTCGGGTGGCAGATTTCTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGTGTTGCTTTTTCACTCTACTCTGCTTGGTTTCGATGCTTAGTTTAATGTTGTAAGGTAGTTACCAGTTGTAAATGACTGTCTATCGTTTTCTCATGTTAAATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCAAGCAGCGATATGTCCATCAGTCCATGTTCCGGCTCAACTAACCTTGCTTTATCGGATAGAACTTGTGGAAAGGGGAGGGATTTTACTTCTTCCGTTTCATTCTAGAATTTTCTATATTCATATTGA]




>consensus_6578#0
TTGGCCACTCGACCAAGCCAGTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TCCCCCAAATCCCGCGCCCGCCGGTACGAATCCCGCCGCCGCGCCGCGCCGCCATGTCCT
CCTCCCGCGGGCCGCCATCTCCTCCGTCCCACCCGAACCCCATCGATCCCTTCGCCGCGG
CGGCGGCGGCGGCGGCGGAGGCGGAAGGGGAGGCGGCGCCGCCGCCGCGAAACCCTATCA
TCCCCCGCGACCCCCCCTCGCCGGAGATGGAGGCCACCGCCGAGGCGCTCACCCGGGAGG
AGGTTCTGCGCCGGCGGAGGCGCCGCGCCAAGCGCCTCGTCGACGTCTACCGGCGCCTCT
ACTGGACGCTCGGGGAGGAGCTGCGGGCGCGGCACCGGCAGTACGTCTGGGAGCTCGGCC
GGAGCCCGCTCGAGGCCGAGCAGCCGCCGCCGCCGCCGCCGACCTCCGCCGCGCCCGGCC
CCGGCGGGGACCTGGTGGTGGTCAGGCCGGTGTCCGCCACGGTGCCGAGGCGGAAGAAGT
GCGGCTTCGCCGGCTGCAAGGTGCGGACCATGGCGATGGCCAGGTTCTGCCACTCCCACA
TCCTCTCCGACCCCAACCAAGTGCTCTACAAGGGCTGCGCCTATATCAGCAAGAGTGGCC
CACAAGTTCAAATTACTTGCGGCAGACCCATCCTTAAAGCTTCAGTTCCCTCCCTCTGCA
ATTCTCATTTTCAAAAATGTCAGAAGTTAATTACACAAGGTTATAAGAAGTTTGGAGTTA
ACCCATCACCCACAGGCAAGGTCTCTCCAAATTTTGGTTTGTTGGTTGCTGAATGTGTTC
GTCAGATCCAAGCCAAGCGGAGAGAATCACCAAGTTGAATGAGCCGTGTCACAACTCACA
ACTTTGTTGTTGCACAAATTTTATGAAATGGCAGGTATTATGAGGCTTACCAAGGCACTG
ATAACTTCTTTTGCCAGAATACTGCACCCACTCTTACTTGAACGAAATAAAATGAGGAAA
ATTCATAGATATATGTGAGTTTGAGTTTGAAGTGCATCTCTGGCAGGATTATTTCATGGG
GGAATTGGAAGACGGTTAACTGCAGATGTCAAATGTATAGTTGATTGATTAAGTCAATGG
AGTATCACCATGAGGATGCACGAATGAAATTCCCTTGGATAGCACCTTATATCTAGTAAA
ATGCTTTATCATGAGTCCAATGGGTTGCTGTTGCTGATCACCAGGGAGGGATGCCATTTA
ATTTTGCTGTTTTTGCTGGGAGGTTCAATGCTGACTGTATGCATAGCTGCTTGGTTCTTC
ATAATGAGTTGCAACTTGCAAGGCAGTATAGCTCATCACATTCTGAACTGGATTTCACAC
TGAATTAAGTTCATCCAACATGGGCCATATGTTCTTTGTGATTGTAGCCGGTGCAATTGC
TGTGCTACTATTCAGCTTGGTGCCAGAAATGTTCTTTTTGTGAAGTAAATACCATTATCA
CTTTCCCCAAGTGGTGATTATGAACCTTGAATATATGCATGTACCTCACTTCCCTAGGTG
GTGATTTCGTACATTGCTTATACGCCCATGCAGATGCAGAGGGAGCTGAAAGCCTGATGC
AATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATA
CTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTG
CCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAA
ATGTTTTTGCACCACCTGCTGATGGAGGAGCCCCACCAGAATAGATTTGTGAAGGTGTTG
CTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCACCACATACTGAGCGACCCTGCT
AATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCACAATCGAATTC
CATGGACAGAAAAATTGAATTTGGATGAACATTAATTTCTTGGCTACATATGACAGTGGA
TGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCAT
ATCAGATATCATGGGAATAGGACAAGAATGTCGGGTGGCAGATTTCTGATGCTGGGATTT
ATCAGGATTGCTAGCGTAAGGTGTTGCTTTTTCACTCTACTCTGCTTGGTTTCGATGCTT
AGTTTAATGTTGTAAGGTAGTTACCAGTTGTAAATGACTGTCTATCGTTTTCTCATGTTA
AATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCAAG
CAGCGATATGTCCATCAGTCCATGTTCCGGCTCAACTAACCTTGCTTTATCGGATAGAAC
TTGTGGAAAGGGGAGGGATTTTACTTCTTCCGTTTCATTCTAGAATTTTCTATATTCATA
TTGA

consensusID : consensus_6578#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence 
                              [GGAGCTGAAAGCCTGATGCAATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCCCATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCCCAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGACCATTAATTTTTTGGCTACATATGCCAGTGGATGTGCTGGATGTGGATTATTATTTTTTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATATCATGGGAATTGGCCAAGAATGTCGGGTGGCAGATTTTTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGGGTCGCTTTTTCACTCTACTCTGCTTGGTTTGGATGCTTAGTTTAATTGTTGTAAGGTAGTTACCAGTTGTAAATGCCTGTATATCGTTTTTTCATGTTAAAGGGGTTTTCTGTGAGTGCCCTAATTAAATACAAAAAAAAAAAAGA]

[-] EMBL CB643309             [GGAGCTGAAAGCCTGATGCAATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCCCATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCCCAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGACCATTAATTTTTTGGCTACATATGCCAGTGGATGTGCTGGATGTGGATTATTATTTTTTTGGCTACAAGACATTGTGGATGTGAAAGCGCATATCAGATATCATGGGAATTGGCCAAGAATGTCGGGTGGCAGATTTTTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGGGTCGCTTTTTCACTCTACTCTGCTTGGTTTGGATGCTTAGTTTAATTGTTGTAAGGTAGTTACCAGTTGTAAATGCCTGTATATCGTTTTTTCATGTTAAAGGGGTTTTCTGTGAGTGCCCTAATTAAATACAAAAAAAAAAAAGA]




>consensus_6578#1
GGAGCTGAAAGCCTGATGCAATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAG
AGTGATACTGCATAACATACTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTC
CATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAG
AGATGCTTTGCATTGGTAAATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAA
TAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCC
CATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACC
AAGTATCCCAATCGAATTCCATGGACAGAAAAATTGAATTTGGATGACCATTAATTTTTT
GGCTACATATGCCAGTGGATGTGCTGGATGTGGATTATTATTTTTTTGGCTACAAGACAT
TGTGGATGTGAAAGCGCATATCAGATATCATGGGAATTGGCCAAGAATGTCGGGTGGCAG
ATTTTTGATGCTGGGATTTATCAGGATTGCTAGCGTAAGGGGTCGCTTTTTCACTCTACT
CTGCTTGGTTTGGATGCTTAGTTTAATTGTTGTAAGGTAGTTACCAGTTGTAAATGCCTG
TATATCGTTTTTTCATGTTAAAGGGGTTTTCTGTGAGTGCCCTAATTAAATACAAAAAAA
AAAAAGA

consensusID : consensus_6578#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence 
                              [GAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTCCAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTCCCAAGTATCCCAATGGAATTCCATGGACAGAAAAATTGAATTTGGAGGAACATTAATTTTTTGGCTACATATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTCCGCCGCGGCGAAGGGATCGATGGGGTTCGGGTGGGACGGAGGAGATGGCGGCCCGCGGGAGGAGGACATGGCGGCGCGGCGCGGCGGCGGGATTCGTACCGGCGGGCGCGGGATTTGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGACTGGCTTGGTCGAGTGGTCAAACAATCTCAAACTTCTCAGGGAACGCGACGCGAGCGTTT]

[-] EMBL CB643308             [GAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTGTAGGAGCCCTCCAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTGCTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCACATACTGAGCGACCCTGCTAATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTCCCAAGTATCCCAATGGAATTCCATGGACAGAAAAATTGAATTTGGAGGAACATTAATTTTTTGGCTACATATGACAGTGGATGTGCTGGATGTGGATTATTATTTTCTCCGCCGCGGCGAAGGGATCGATGGGGTTCGGGTGGGACGGAGGAGATGGCGGCCCGCGGGAGGAGGACATGGCGGCGCGGCGCGGCGGCGGGATTCGTACCGGCGGGCGCGGGATTTGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGACTGGCTTGGTCGAGTGGTCAAACAATCTCAAACTTCTCAGGGAACGCGACGCGAGCGTTT]




>consensus_6578#2
GAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATACTGTG
TAGGAGCCCTCCAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTGCCTGG
TACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAAATGTT
TTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTGCTTGG
TTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCACATACTGAGCGACCCTGCTAATAA
CGAATTGAGGTGATATTTATTCAAGGAATGTTTCCCAAGTATCCCAATGGAATTCCATGG
ACAGAAAAATTGAATTTGGAGGAACATTAATTTTTTGGCTACATATGACAGTGGATGTGC
TGGATGTGGATTATTATTTTCTCCGCCGCGGCGAAGGGATCGATGGGGTTCGGGTGGGAC
GGAGGAGATGGCGGCCCGCGGGAGGAGGACATGGCGGCGCGGCGCGGCGGCGGGATTCGT
ACCGGCGGGCGCGGGATTTGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG
AGGACTGGCTTGGTCGAGTGGTCAAACAATCTCAAACTTCTCAGGGAACGCGACGCGAGC
GTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6578#0      TTGGCCACTCGACCAAGCCAGTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 60
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TCCCCCAAATCCCGCGCCCGCCGGTACGAATCCCGCCGCCGCGCCGCGCCGCCATGTCCT 120
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CCTCCCGCGGGCCGCCATCTCCTCCGTCCCACCCGAACCCCATCGATCCCTTCGCCGCGG 180
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CGGCGGCGGCGGCGGCGGAGGCGGAAGGGGAGGCGGCGCCGCCGCCGCGAAACCCTATCA 240
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TCCCCCGCGACCCCCCCTCGCCGGAGATGGAGGCCACCGCCGAGGCGCTCACCCGGGAGG 300
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      AGGTTCTGCGCCGGCGGAGGCGCCGCGCCAAGCGCCTCGTCGACGTCTACCGGCGCCTCT 360
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ACTGGACGCTCGGGGAGGAGCTGCGGGCGCGGCACCGGCAGTACGTCTGGGAGCTCGGCC 420
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      GGAGCCCGCTCGAGGCCGAGCAGCCGCCGCCGCCGCCGCCGACCTCCGCCGCGCCCGGCC 480
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CCGGCGGGGACCTGGTGGTGGTCAGGCCGGTGTCCGCCACGGTGCCGAGGCGGAAGAAGT 540
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      GCGGCTTCGCCGGCTGCAAGGTGCGGACCATGGCGATGGCCAGGTTCTGCCACTCCCACA 600
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TCCTCTCCGACCCCAACCAAGTGCTCTACAAGGGCTGCGCCTATATCAGCAAGAGTGGCC 660
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CACAAGTTCAAATTACTTGCGGCAGACCCATCCTTAAAGCTTCAGTTCCCTCCCTCTGCA 720
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATTCTCATTTTCAAAAATGTCAGAAGTTAATTACACAAGGTTATAAGAAGTTTGGAGTTA 780
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ACCCATCACCCACAGGCAAGGTCTCTCCAAATTTTGGTTTGTTGGTTGCTGAATGTGTTC 840
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      GTCAGATCCAAGCCAAGCGGAGAGAATCACCAAGTTGAATGAGCCGTGTCACAACTCACA 900
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ACTTTGTTGTTGCACAAATTTTATGAAATGGCAGGTATTATGAGGCTTACCAAGGCACTG 960
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATAACTTCTTTTGCCAGAATACTGCACCCACTCTTACTTGAACGAAATAAAATGAGGAAA 1020
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATTCATAGATATATGTGAGTTTGAGTTTGAAGTGCATCTCTGGCAGGATTATTTCATGGG 1080
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      GGAATTGGAAGACGGTTAACTGCAGATGTCAAATGTATAGTTGATTGATTAAGTCAATGG 1140
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      AGTATCACCATGAGGATGCACGAATGAAATTCCCTTGGATAGCACCTTATATCTAGTAAA 1200
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATGCTTTATCATGAGTCCAATGGGTTGCTGTTGCTGATCACCAGGGAGGGATGCCATTTA 1260
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATTTTGCTGTTTTTGCTGGGAGGTTCAATGCTGACTGTATGCATAGCTGCTTGGTTCTTC 1320
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ATAATGAGTTGCAACTTGCAAGGCAGTATAGCTCATCACATTCTGAACTGGATTTCACAC 1380
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TGAATTAAGTTCATCCAACATGGGCCATATGTTCTTTGTGATTGTAGCCGGTGCAATTGC 1440
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TGTGCTACTATTCAGCTTGGTGCCAGAAATGTTCTTTTTGTGAAGTAAATACCATTATCA 1500
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      CTTTCCCCAAGTGGTGATTATGAACCTTGAATATATGCATGTACCTCACTTCCCTAGGTG 1560
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      GTGATTTCGTACATTGCTTATACGCCCATGCAGATGCAGAGGGAGCTGAAAGCCTGATGC 1620
consensus_6578#1      -----------------------------------------GGAGCTGAAAGCCTGATGC 19
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      AATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATA 1680
consensus_6578#1      AATTCGAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATA 79
consensus_6578#2      -----GAAGTTTGCATGAATTCAAAGGTGCTCTGTTTTAAGAGTGATACTGCATAACATA 55
                           *******************************************************

consensus_6578#0      CTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTG 1740
consensus_6578#1      CTGTGTAGGAGCCCTACAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTG 139
consensus_6578#2      CTGTGTAGGAGCCCTCCAAACAAGAGATTACGAGGAGATTCCATGTGCATTTGATGCTTG 115
                      *************** ********************************************

consensus_6578#0      CCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAA 1800
consensus_6578#1      CCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAA 199
consensus_6578#2      CCTGGTACAACTGTATAGCTGGAATCTTTGCATGATATGAGAGATGCTTTGCATTGGTAA 175
                      ************************************************************

consensus_6578#0      ATGTTTTTGCACCACCTGCTGATGGAGGAGCCCCACCAGAATAGATTTGTGAAGGTGTTG 1860
consensus_6578#1      ATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTG 259
consensus_6578#2      ATGTTTTTGCACCCCCTGCTGATGGAGGAGCCCCCCCAGAATAGATTTGTGAAGGTGTTG 235
                      ************* ******************** *************************

consensus_6578#0      CTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCACCACATACTGAGCGACCCTGCT 1920
consensus_6578#1      CTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCCCATACTGAGCGACCCTGCT 319
consensus_6578#2      CTTGGTTGCAGGGATGCTGTGCCAATAATGGTTTTGCCCCACATACTGAGCGACCCTGCT 295
                      ************************************* ** *******************

consensus_6578#0      AATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCACAATCGAATTC 1980
consensus_6578#1      AATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTACCAAGTATCCCAATCGAATTC 379
consensus_6578#2      AATAACGAATTGAGGTGATATTTATTCAAGGAATGTTTCCCAAGTATCCCAATGGAATTC 355
                      ************************************** ********* **** ******

consensus_6578#0      CATGGACAGAAAAATTGAATTTGGATGAACATTAATTTCTTGGCTACATATGACAGTGGA 2040
consensus_6578#1      CATGGACAGAAAAATTGAATTTGGATGACCATTAATTTTTTGGCTACATATGCCAGTGGA 439
consensus_6578#2      CATGGACAGAAAAATTGAATTTGGAGGAACATTAATTTTTTGGCTACATATGACAGTGGA 415
                      ************************* ** ********* ************* *******

consensus_6578#0      TGTGCTGGATGTGGATTATTATTTTCTTGGCTACAAGACATTGTGGATGTGAAAGCGCAT 2100
consensus_6578#1      TGTGCTGGATGTGGATTATTATTTTTTTGGCTACAAGACATTGTGGATGTGAAAGCGCAT 499
consensus_6578#2      TGTGCTGGATGTGGATTATTATTTTCTCCGCCGC--GGCGAAGGGATCGATGGGGTTCGG 473
                      ************************* *  **  *  * *   * *   *     *  *  

consensus_6578#0      ATCAGATATCATGGGAATAGGACAAGAATGTCGGGTGGCAGATTTC-TGATGCTGGGATT 2159
consensus_6578#1      ATCAGATATCATGGGAATTGGCCAAGAATGTCGGGTGGCAGATTTT-TGATGCTGGGATT 558
consensus_6578#2      GTGGGA---CGGAGGAGATGGC---GGCCCGCGGGAGGAGGACATGGCGGCGCGGCGCGG 527
                       *  **   *   ***   **    *     **** **  **  *   *  ** * *   

consensus_6578#0      TATCAGGATTGCTAGCGTAAGGTGTTGCTTTTTCACTCTACTCTGCTTGGTTTCGATGCT 2219
consensus_6578#1      TATCAGGATTGCTAGCGTAAGGGGTCGCTTTTTCACTCTACTCTGCTTGGTTTGGATGCT 618
consensus_6578#2      CGGCGGGATTCGTACCGGCGGGCG-CGGGATTTGGGGGAAGAGAGAGAGAGAGAGAGAGA 586
                         * *****  ** **   ** *  *   ***      *    *   *     **    

consensus_6578#0      TAGTTTAAT-GTTGTAAGGTAGTTACCAGTTGTAAATGACTGTCTATCGTTTTCTCATGT 2278
consensus_6578#1      TAGTTTAATTGTTGTAAGGTAGTTACCAGTTGTAAATGCCTGTATATCGTTTTTTCATGT 678
consensus_6578#2      GAGAGAGAGAGAGGAGGACTGGCT--TGGTCG--AGTGGTCAAACA--ATCTCAAACTTC 640
                       **    *  *  *     * * *    ** *  * **       *   * *     *  

consensus_6578#0      TAAATGATTTTACTGTGAGAGCCCTAACCCTACGTGCTCTGTTTTTTGATATGGCTGTCA 2338
consensus_6578#1      TAAAGGGGTTTTCTGTGAGTGCCCTAATTAAATACAAAAAAAAAAAAGA----------- 727
consensus_6578#2      TCAGGGAACGCGACGCGAGCGTTT------------------------------------ 664
                      * *  *        * *** *                                       

consensus_6578#0      AGCAGCGATATGTCCATCAGTCCATGTTCCGGCTCAACTAACCTTGCTTTATCGGATAGA 2398
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      ACTTGTGGAAAGGGGAGGGATTTTACTTCTTCCGTTTCATTCTAGAATTTTCTATATTCA 2458
consensus_6578#1      ------------------------------------------------------------
consensus_6578#2      ------------------------------------------------------------
                                                                                  

consensus_6578#0      TATTGA 2464
consensus_6578#1      ------
consensus_6578#2      ------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)