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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2225 fasta sequence
[CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAGATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAATCGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGATTCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTGCCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGCCGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTGGTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCCGTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCACCACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAACAGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTCCTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTTCGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCACTATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGCCGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGAATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGGTGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATAGCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCACCTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTCAGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGACCCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATATATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGCAAAGAACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGGTGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCAGTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTCATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCGAATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTTGAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTTGCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACATTACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATTGTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTATATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAAAAAAAA]
[+] EMBL AK103624 [CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAGATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAATCGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGATTCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTGCCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGCCGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTGGTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCCGTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCACCACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAACAGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTCCTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTTCGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCACTATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGCCGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGAATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGGTGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATAGCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCACCTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTCAGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGACCCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATATATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGCAAAGAACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGGTGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCAGTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTCATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCGAATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTTGAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTTGCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACATTACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATTGTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTA ]
[+] EMBL CK085197 [ TCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGGGAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTCCTGATCGCGGTGGTG ]
[+] EMBL CA755171 [ AATTCCNATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAGTGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTATATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAAAAAAAA]
consensusID : consensus_6582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTACCGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTGAATTTGAGTATTTTCTTCGAACCTGACTGTACTACCCGGCCGGTAGAGCTTGTGCGCTTAATGAGAGCTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCGTACCGACGATTCGGAGTTTTAGGGCGGCCCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGACCCGGAAGCCGCGCAGAGCCACCTGTGACGCCTGGGCATACGGCAGCCGGTGGATACAGTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCGCCCCGCCGCTGTGAGCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG]
[+] EMBL CA755788 [AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGGGTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGTGTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGGTGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTACCGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTGAATTTGAGTATTTTCTTCGAACCTGACTGTACTACCCGGCCGGTAGAGCTTGTGCGCTTAATGAGAGCTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCGTACCGACGATTCGGAGTTTTAGGGCGGCCCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGACCCGGAAGCCGCGCAGAGCCACCTGTGACGCCTGGGCATACGGCAGCCGGTGGATACAGTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCGCCCCGCCGCTGTGAGCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6582#0 CCTCTTCCCCTCTCTTCCACCTCTCGAGCTCTCGCCCCAACGAGATTTCCTCTTTTTCGG 60
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GAGGATTTTCCTCTACCCGGATCCGGTTGCTGGTGCCATAGATCGACGCGCCGTCTTCTC 120
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CTGATCGCGGTGGTGTTTTTTTTTTTTTTGTTTTGGATTTCCGGTGCTGGGAGTGGAGAG 180
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 ATTCGCTCGGATTGGATCTGTGTGTGCTGATCCGTGTGGGTGGTGGATCTGACGGAGAAT 240
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CGGAGGAGAGGAAGAGGAGAGTCTGGTTGGTTGGTGGAGACGACGATTTCTGTGGAGGAT 300
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 TCGACTTGCGCATCGGCTGTAGATCTGGAAGGGCTTTGGGTGACCTACTGCTCCAAGCTG 360
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CCTAAGTTATATCGCGAAGTGTCGAGCTTTCACGCCCACCGCAATCATCATCACCATCGC 420
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CGACGATGGAGGGTCTTGTGGTTATCTCACAGCAGCGCAACCACCATAACCAACACTCTG 480
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GTGGCCGAGGCAAGATGACGGGGCCTCACTTCTCATCGCCGCCGTCCTCCCATGGCTTCC 540
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GTGGCATGAACTGCCGGTCTTTCCATTCCGGTGTATGTGCTGGCCTCCTGCCCTCCCCAC 600
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CACCTCCGCCTGCTCGCACGTACTCATCACCAGAGCCTAAGACACCAAAGCAGCAGCAAC 660
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 AGCTGCAGCGCCGTGGTGGCAAGCGTAGCCGGCCCATCTCAATAAGCCCTTCAACTTCTC 720
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CTCCATCCCGCCCTGAGCTGTGGGCGGGCCCAGCATTCTCCAATTCACCACCTCCTAGTT 780
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CGCTCCCAATCCCCAAGTTCTCTCTGCGACAGAACCGCAGCATCTCACTTGAATTGCCAC 840
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 TATTTGAGCGGTCTGATGAAGTGGAGGTGAAGCCGCATGCTAAATCGGCTCCTTCCTCGC 900
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 CGGTGGGTGGATCAGGGTTTGACTTCTTCAATGATAATGAAACTGCTGTTGCGACGGAGA 960
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 ATCTTAGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGG 1020
consensus_6582#1 -----AGGAGGATTCTCCATCTGGATATTTCCGATCATTGAATGATGGGAGGATGGAAGG 55
*******************************************************
consensus_6582#0 GTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGT 1080
consensus_6582#1 GTAGTGTCTGTGTACATAGGTTATCATCCACTGACTTTAGTTGTTCACATGCATAGTAGT 115
************************************************************
consensus_6582#0 GTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGG 1140
consensus_6582#1 GTATAGAGTAATGAGAATAATAAGTTAGGTAGTACTGTATGGTCAAGGTTATGGTGGAGG 175
************************************************************
consensus_6582#0 TGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAAACTGTCATATGTAGG 1200
consensus_6582#1 TGGAGTTTTGTAGGTGAAGCATCTTCTGAAAGTTGGGTAGTGAAATCTGTCGTATAGTAC 235
********************************************* ***** ***
consensus_6582#0 TGTTGTTAAGGTGGACAGTGGGGTAAGGATAGGGTGGATGGCAGTTGACATACCTTCATA 1260
consensus_6582#1 CGATGATATGGAGAACTGAGCGGCAGGTACAGGGTCGCTG--AATTTGAGTATTTTC--- 290
* ** ** ** * ** * * ** * * * ***** * ** * ** ** ***
consensus_6582#0 GCTTGGGCTCACCTATGATGTTTTAGGTGTAGTATAAAATCTTATTTGCATCCATGGCAC 1320
consensus_6582#1 -TTCGAACCTGACTGTACTACCCGGCCGGTAG------AGCTTGTGCGC-TTAATGAGAG 342
* * * ** * * **** * *** * ** * *** *
consensus_6582#0 CTGTGATGAACTGACAGTGGCACTCTGCCAGTGCAGAAACATCTGCGGTTAGTTCATTTC 1380
consensus_6582#1 CTTGTGTATGCTGGATTTGGTGGTGTCATCGTGTTCCG-TACCGACGATTCGGAGTTTTA 401
** * *** *** * * *** * * ** ** * ***
consensus_6582#0 AGGTAGAATAGCATAGTCTGGCAGCTTGTTAACGATAGCATACATTCTAGTATCTTAGAC 1440
consensus_6582#1 GGGCGGC---CCGTAAGTTACCCTTCTGGGAGTGATCGGACCGAGCCGA----CCCGGAA 454
** * * ** * * ** * *** * * * * * * **
consensus_6582#0 CCCAATCAGATGTTAAATAGTTCTAGGGAAACTACTTTTCTTGCATTTCTTTGCATATAT 1500
consensus_6582#1 GCCGCGCAGA-GCCA------CCTGTGACGCCTGGGCATACGGCAGC-CGGTGGATACA- 505
** **** * * ** * ** * *** * ** *** *
consensus_6582#0 ATAACCTCCTGGCTAACTGATTCTCACCCTTCAACCATCCTGACCTCCCTGGTGCTCTGC 1560
consensus_6582#1 GTGCCCGCATTACAGACCCGGTCTGCCCGTCCCGTCGCCGCG----CCCCGCCGCTGTGA 561
* ** * * * ** *** ** * * * * * *** * *** **
consensus_6582#0 AAAGA-ACACCAATATATCTCCTCACTGGCTCTTCTGCTTTTTGGAAGGAAGAAGCTGGG 1619
consensus_6582#1 GCAGACGCGCCGTCGTAGGACCGCCGTGACGACGCCACGGTCTCCAG------------- 608
*** * ** ** ** * ** * * * * * *
consensus_6582#0 TGGAAGATGGAAGCTGTCCCCTCTCTTGCTCCCTTCTATGTCAATACTAACTTTTTCCCA 1679
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GTTTGCTGCATATCTATCATGACATGTTCTCTCCACCTTCATTCATTCTAGATTCATCTC 1739
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 ATGTCTCTTCACAAGTTGCATTTAGTACCAACCTATATTCAAATCATCATACACCCTCCG 1799
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 AATCCCTTTCCGCTTTCATGAGCTCTAGTTTTCTACTTCTCTTCAAGCCTCGATGGTCTT 1859
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GAGGAACAAAGTTAGACAATGATGTCTGCGGAACATGCAAGTCCCAATATGGTTGGCTTT 1919
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GCTGTTCATATTTACCCTATGTGAAGACTTGGAAGTTACCTGTCTTAGTTCCTGCTACAT 1979
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 TACTATGTTTGCCACCTAGCAGTCAAGAAGCACTTTGCTGGAGTATTAGTTCTGTCAATT 2039
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 GTAATTCCAATCTTAGATGGCTGTCCATGTTGATGTTCTGGTGTAAATCAGCAGGCATAG 2099
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 TGTTAACAAATAATGTTACTATCCCATTAATCAGAACTATATAATATTATTATGTTTTAT 2159
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 ATTACAACTAAATGCCATTGATAGCCAATTTTTTATTATATTCTAATTTCTCANAAAAAA 2219
consensus_6582#1 ------------------------------------------------------------
consensus_6582#0 AAAAAA 2225
consensus_6582#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||