These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1632 fasta sequence [CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACGGCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATCGAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGCCTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGCGTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGGACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGGCCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGAGCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTCGACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA-GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT---CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAGTTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGCCGCAAAAATTGA] [+] EMBL AK071257 [CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACGGCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATCGAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGCCTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGCGTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGGACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGGCCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGAGCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTCGACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGCCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAAATTTCATGTAACTTATAGGCCTGTCAGCAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAGTTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGCCGCAAAAATTGA] [+] EMBL CB629941 [ AGAACGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATC ] [-] EMBL CB629942 [ TGTTATCATGCAGGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGAGGTCCGGACTGAAAAGATCCCTTCc ] consensusID : consensus_6595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence [TGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTCTGATGGTGCATGGAAACTCAAAGACAAAACCATCCAGCGATGGCAGCAGATAACAAAAACCACCATCTGTGGTGAGGACACAGCANGAGGATGTGACAATGTATCTGATGTATCCTGAGCGCAAGTGAATANGGTACTGCTGAAGTCNATAGANCANGAGCTTATCGCCAGAGTAAAGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCTTNAAACCAATTTTGGCGTGGAAATCTTTCTTTGGGCCCTCATTCCCAGTTTTAAAACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTCGGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAAAAANNNNNNNNNNNNNNNNNNNATTNNNNAAAGAACCCACCGGCCGTGC] [+] EMBL AW155175 [TGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTCTGATGGTGCATGGAAACTCAAAGACAAAACCATCCAGCGATGGCAGCAGATAACAAAAACCACCATCTGTGGTGAGGACACAGCANGAGGATGTGACAATGTATCTGATGTATCCTGAGCGCAAGTGAATANGGTACTGCTGAAGTCNATAGANCANGAGCTTATCGCCAGAGTAAAGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCTTNAAACCAATTTTGGCGTGGAAATCTTTCTTTGGGCCCTCATTCCCAGTTTTAAAACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTCGGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAAAAANNNNNNNNNNNNNNNNNNNATTNNNNAAAGAACCCACCGGCCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6595#0 CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACG 60 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 GCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATC 120 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 GAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGC 180 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 CTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGC 240 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 GTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGG 300 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 ACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGG 360 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 CCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGA 420 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 GCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTC 480 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 GACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTG 540 consensus_6595#1 --------------------------------------TGCAGCTAACATTGCCGCGCTG 22 ********************** consensus_6595#0 GCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAG 600 consensus_6595#1 GCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAG 82 ************************************************************ consensus_6595#0 GTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCT 660 consensus_6595#1 GTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCT 142 ************* ********************************************** consensus_6595#0 ATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATAT 720 consensus_6595#1 ATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATAT 202 ************************************************************ consensus_6595#0 AAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTA 780 consensus_6595#1 AAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTA 262 ************************************************************ consensus_6595#0 TGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTA 840 consensus_6595#1 TGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTA 322 ************************************************************ consensus_6595#0 AGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCA 900 consensus_6595#1 AGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCA 382 ************************************************************ consensus_6595#0 TACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAG 960 consensus_6595#1 TACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAG 442 ************************************************************ consensus_6595#0 GATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGT 1020 consensus_6595#1 GATAATGCTCCTGATGTGGCTATGAAGGAAAGT-CTGATGGTGCAT-GGAAACTCAAAG- 499 ********************************* ************ ************ consensus_6595#0 ACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGAC 1080 consensus_6595#1 ACAAAACCATCCAGCGATGG-CAGCAGATAAC--AAAAACCACCATCTGTGGT-GAGGAC 555 ******************** ********** ** **************** ****** consensus_6595#0 AACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAA 1140 consensus_6595#1 A--CAGCANGAGGATGTGA---CAATGT-ATCTGA-TGTA-TCCTGAG-CGCAA-GTGAA 605 * **** ******** ****** ****** **** ******* ***** ***** consensus_6595#0 TCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTA 1200 consensus_6595#1 T-ANGGT--ACTGCTGAAG---TCNATAGANCA---NGAGCT-TATCGCCAGAG---TAA 652 * * *** ******* ** ** * **** ******** ** * consensus_6595#0 AAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATT 1260 consensus_6595#1 AGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCT 712 * * ** * *** **** * * ** * * * * ** * consensus_6595#0 TCATGTAACTTATAGGCCTGTCAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCA 1320 consensus_6595#1 TNAAACCAATTTT-GGCGTGGAAATCTTTCTTTGGGCCCTCATT-----CCCAGTTTTAA 766 * * * ** * *** ** * * ** * * ** * ** * *** * consensus_6595#0 AAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCAT 1380 consensus_6595#1 AACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTC 826 ** * * *** * ** * ** * * **** * * * * * consensus_6595#0 GAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAA 1440 consensus_6595#1 GGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAA----AAANNNNNNNNNNNNNNNNNNNA 882 * * ** ** **** * * * * consensus_6595#0 GCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATC 1500 consensus_6595#1 TTNNNNAAAGAACCCACCGGCCGTGC---------------------------------- 908 * *** * ** consensus_6595#0 TCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAG 1560 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 TTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGC 1620 consensus_6595#1 ------------------------------------------------------------ consensus_6595#0 CGCAAAAATTGA 1632 consensus_6595#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||