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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1632 fasta sequence
[CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACGGCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATCGAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGCCTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGCGTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGGACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGGCCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGAGCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTCGACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA-GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT---CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAGTTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGCCGCAAAAATTGA]
[+] EMBL AK071257 [CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACGGCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATCGAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGCCTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGCGTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGGACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGGCCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGAGCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTCGACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGCCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAAATTTCATGTAACTTATAGGCCTGTCAGCAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAGTTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGCCGCAAAAATTGA]
[+] EMBL CB629941 [ AGAACGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCA GTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATC ]
[-] EMBL CB629942 [ TGTTATCATGCAGGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGTACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGACAACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAATCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTAAAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATTTCATGTAACTTATAGGCCTGT CAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCAAAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCATGAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAAGCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATCTCTGTAACACCTAGCCAAGAGGTCCGGACTGAAAAGATCCCTTCc ]
consensusID : consensus_6595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence
[TGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTCTGATGGTGCATGGAAACTCAAAGACAAAACCATCCAGCGATGGCAGCAGATAACAAAAACCACCATCTGTGGTGAGGACACAGCANGAGGATGTGACAATGTATCTGATGTATCCTGAGCGCAAGTGAATANGGTACTGCTGAAGTCNATAGANCANGAGCTTATCGCCAGAGTAAAGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCTTNAAACCAATTTTGGCGTGGAAATCTTTCTTTGGGCCCTCATTCCCAGTTTTAAAACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTCGGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAAAAANNNNNNNNNNNNNNNNNNNATTNNNNAAAGAACCCACCGGCCGTGC]
[+] EMBL AW155175 [TGCAGCTAACATTGCCGCGCTGGCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAGGTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCTATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATATAAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTATGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTAAGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCATACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAGGATAATGCTCCTGATGTGGCTATGAAGGAAAGTCTGATGGTGCATGGAAACTCAAAGACAAAACCATCCAGCGATGGCAGCAGATAACAAAAACCACCATCTGTGGTGAGGACACAGCANGAGGATGTGACAATGTATCTGATGTATCCTGAGCGCAAGTGAATANGGTACTGCTGAAGTCNATAGANCANGAGCTTATCGCCAGAGTAAAGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCTTNAAACCAATTTTGGCGTGGAAATCTTTCTTTGGGCCCTCATTCCCAGTTTTAAAACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTCGGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAAAAANNNNNNNNNNNNNNNNNNNATTNNNNAAAGAACCCACCGGCCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6595#0 CCGCCGCGCGGCCGCTAAAACCCTAGCCACCACCCCCGCCGCCGGCGAGCGACGCGAACG 60
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 GCGAACGCCATGGACCACCACCAGCGGTGGCACCCCACGGTGAACGAGCGCGAGTTCATC 120
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 GAGCGCGCCCTCCAGTCCGACCTCCGCGTCGACGGCCGCCGCCCCTTCGACTTCCGCCGC 180
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 CTCAAGATCCTCTTCGGCAGGGAGGACGGCTCGGCGGAGGTGCAGCTCGGGGACACGCGC 240
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 GTCATGGGCTGCGCCACGGCGCAGCTGGTGCAGCCGTACAAGGACAGGCCCAACGAGGGG 300
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 ACGCTCGCGATATTCACCGAGTTCTCGCCCATGGCCGACCCCGCCTTCGAGCCGGGGCGG 360
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 CCAGGGGAGTCGGCGATCGAGCTCGGTCGCGTCGTCGATCGCGGCCTAAGGGAGAGCCGA 420
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 GCCGTCGATATGGAGTCCCTGTGTGTTGTTGCTGGGAAGCATGTTTGGTCGGTGCGCGTC 480
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 GACCTTCATATCTTGGATAATGGAGGGAATCTCATTGATGCAGCTAACATTGCCGCGCTG 540
consensus_6595#1 --------------------------------------TGCAGCTAACATTGCCGCGCTG 22
**********************
consensus_6595#0 GCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAG 600
consensus_6595#1 GCAGCTCTGTCTACTTTCCGGAGGCCTGAATGTACGGTCGGAGGGGAAGATGGTCAACAG 82
************************************************************
consensus_6595#0 GTTACAGTACATGGCCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCT 660
consensus_6595#1 GTTACAGTACATGACCCTGAGGTAAGGGACCCACTCCCTTTGACAATTCATCATCTCCCT 142
************* **********************************************
consensus_6595#0 ATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATAT 720
consensus_6595#1 ATTGCTGTGACATTTGCATATTTTGGCGAGGGCAACATCATGGTTATTGATCCGACATAT 202
************************************************************
consensus_6595#0 AAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTA 780
consensus_6595#1 AAGGAAGAAGCTGTTATGGGAGGACGAATGACTGCTACAATTAACTCAAACGGTGATGTA 262
************************************************************
consensus_6595#0 TGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTA 840
consensus_6595#1 TGTTCCATCCAGAAAGCTGGTGGAGAGGGTGTCATGTCAAGTGTTATCATGCAGTGTTTA 322
************************************************************
consensus_6595#0 AGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCA 900
consensus_6595#1 AGAATTGCTTCAGTTAAAGCTGCTGATATAACAAGCAAAATAAAGAATGAGGTTAACTCA 382
************************************************************
consensus_6595#0 TACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAG 960
consensus_6595#1 TACACCTCTGCGAAGGCACTGCAGAAAGTAAAGCGTTTGCCAGCCTCAGCACTGAAAAAG 442
************************************************************
consensus_6595#0 GATAATGCTCCTGATGTGGCTATGAAGGAAAGTTCTGATGGTGCATTGGAAACTCAAAGT 1020
consensus_6595#1 GATAATGCTCCTGATGTGGCTATGAAGGAAAGT-CTGATGGTGCAT-GGAAACTCAAAG- 499
********************************* ************ ************
consensus_6595#0 ACAAAACCATCCAGCGATGGTCAGCAGATAAACAAAGAACCACCATCTGTGGTTGAGGAC 1080
consensus_6595#1 ACAAAACCATCCAGCGATGG-CAGCAGATAAC--AAAAACCACCATCTGTGGT-GAGGAC 555
******************** ********** ** **************** ******
consensus_6595#0 AACAAGCAGGAGGATGTTGAACCAATGTTATCTGAATGTAATCCTGAGGCGCAAAGTGAA 1140
consensus_6595#1 A--CAGCANGAGGATGTGA---CAATGT-ATCTGA-TGTA-TCCTGAG-CGCAA-GTGAA 605
* **** ******** ****** ****** **** ******* ***** *****
consensus_6595#0 TCAAGGTTGACTGCTGGAGGGTCAGATGAGACGCAGGAAGCTATATCGCCAAAGAGTCTA 1200
consensus_6595#1 T-ANGGT--ACTGCTGAAG---TCNATAGANCA---NGAGCT-TATCGCCAGAG---TAA 652
* * *** ******* ** ** * **** ******** ** *
consensus_6595#0 AAAGACGCTGTCAAGCCAAAACACAAAATAAAGAAAAAACAACACAGCAAGAGTTAGATT 1260
consensus_6595#1 AGACCTGCAGCCAACCCAATAGAAAACACCCCCCGAGTAATTTCTGTCTTTGCTTTTCCT 712
* * ** * *** **** * * ** * * * * ** *
consensus_6595#0 TCATGTAACTTATAGGCCTGTCAGTGTTAGATAGCGCAATGTTTGTGGGCATGGTTGGCA 1320
consensus_6595#1 TNAAACCAATTTT-GGCGTGGAAATCTTTCTTTGGGCCCTCATT-----CCCAGTTTTAA 766
* * * ** * *** ** * * ** * * ** * ** * *** *
consensus_6595#0 AAATTCCGTTGTTCTCTTGATGGTGTACATGCTAGATTATACAGCACGATGTATTTTCAT 1380
consensus_6595#1 AACAACGGGGGTTTTTTTCCTTTTGGGCTCCCCCTTTTATTTGTCGTGGTTTCCCCCCTC 826
** * * *** * ** * ** * * **** * * * * *
consensus_6595#0 GAGATTCAAATCAACGTGGAAGGTTTCTATCATTTTTAGTTCCTCTATTTTTTTGTGGAA 1440
consensus_6595#1 GGAACTCTCCAAAAAAAAAAAGGGCGCNNNNAA----AAANNNNNNNNNNNNNNNNNNNA 882
* * ** ** **** * * * *
consensus_6595#0 GCCTTCACTACCACCATTTGTTATGATGTTGATTGTTTCTGCAGTCAATGTCTGAACATC 1500
consensus_6595#1 TTNNNNAAAGAACCCACCGGCCGTGC---------------------------------- 908
* *** * **
consensus_6595#0 TCTGTAACACCTAGCCAAGCTTTCCTGACTGAAAAGATCCCTTCACCATAGCACCATGAG 1560
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 TTGAGTTTCTTCTTCTGATGTTTTGTGTAATTGTGCGCCTTCGTTGTGACGAATGCTAGC 1620
consensus_6595#1 ------------------------------------------------------------
consensus_6595#0 CGCAAAAATTGA 1632
consensus_6595#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||