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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1305 fasta sequence
[CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGT-GCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGAGTTCTATATGTAATCGAATCGAGATCTTGATCTCTCGTCTTTTCATGATTAATTCG]
[+] EMBL AK105527 [CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGT GCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGAGTTCTATATGTAATCGAATCGAGATCTTGATCTCTCGTCTTTTCATGATTAATTCG]
[+] EMBL C98868 [ TCCCTTGTGCTGCAGTTGTGTATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCAGAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAGCAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATCTATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGG GTGGCAAGTTCCTGCGGCGGAA NGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCC ACGTCCACAANGTGTTCGGGGGCAATAACGTCACCA ]
consensusID : consensus_6596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence
[ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGTCGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATCTTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCTGTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGCTTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAACTATTTT]
[+] EMBL BE041023 [ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGTCGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATCTTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCTGTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGCTTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAACTATTTT]
consensusID : consensus_6596#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACTTACGCTTCCGTGGCTATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGNGTTCTATATGTAATCGAATCGNGNTCTTAAAAAAAAAAAAAAAAA]
[+] EMBL C98869 [CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAGCATCGGCGCTGACGTGGCGCCCGTCCTACTTACGCTTCCGTGGCTATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAGCGCGGCAAATAATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGTTAATTAAGAGTTAAGAAGCAACCTATCTATCTATCTATATATAGCCAGCATGAATTATATATATCATCTCCCCGTCCCTTTTTGCATGTTGTGCAAAACCATACTTTGGNGTTCTATATGTAATCGAATCGNGNTCTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6596#0 CCTTGCTTTTTCATATTTTGTTGCCTCTACATCTCACCTTTCCCTTGTGCTGCAGTTGTG 60
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 TATAGTAGGAGAAGCTGATTTCTATATCTCTCTTCCCCTCTCTCCTAAAGATCACTACCA 120
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 GAAAGAAGTCATGCTCTCCTGCTTGATCCTTGGATATCAGTGGATCTTGGAAGAAACAAG 180
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 CAGCAACTAAGAAAATCTGCCACATATTGCTGTTGTCTTTCTTCGTCAGATCATCAGATC 240
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 TATCCTCTTCGACCACAAATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTC 300
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 GAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCC 360
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 GGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTG 420
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 CGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGT 480
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 GTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGA 540
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 CGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTG 600
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 ------------------------------------------------------------
consensus_6596#0 CGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACAC 660
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 --------ATAGGTGTAGCTAGCTAGCTCGCCGGAAATGGCATCCTCGTCGAGCACCAGC 52
consensus_6596#0 CGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCC 720
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 AACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGA 112
consensus_6596#0 CGTCACCGCCGCCCCGAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGC 780
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 TCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCT 172
consensus_6596#0 CGTCAGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGAT 840
consensus_6596#2 ------------------------------------------------------------
consensus_6596#1 CCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCC 232
consensus_6596#0 AGCGCCGCCTTCCCCCCACACGGCCGGGTGCTACTACGCCCGCAACAACAACGCCGGGAG 900
consensus_6596#2 -----CCCCTTCCCCCCACANGNCCGGGTGCTACTACGCCCGCAACAACACGCCCGGGAG 55
consensus_6596#1 AGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACG-CCGTGAG 291
* * * * * * * **** * * ** ** * * *** ***
consensus_6596#0 CATCGGCGCTGACGTGGC----GCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACA- 955
consensus_6596#2 CATCGGCGCTGACGTGGC----GCCCGTCCTAC-TTACGCTTCCGTGGCTA-TTGGACA- 108
consensus_6596#1 CTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGC 351
* *** *** *** ***** * * * ** **** * * *
consensus_6596#0 -GTGAACGCCATT-AGCACCACCACCACCAACTCAGGAT-----------CAGAGAGCAT 1002
consensus_6596#2 -GTGAACGCCATT-AGCACCACCACCACCAACTCAGGAT-----------CAGAGAGCAT 155
consensus_6596#1 CATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGC 411
* ** * * *** *** ***** *** ** * * * *
consensus_6596#0 TGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAG-CGCGGCAAATAA 1061
consensus_6596#2 TGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATGTGAATTGAAG-CGCGGCAAATAA 214
consensus_6596#1 CGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGC 471
* * * * * * * * ** ** * **** * * * * * *
consensus_6596#0 TGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGG------------AGAGGCTT 1109
consensus_6596#2 TGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGG------------AGAGGCTT 262
consensus_6596#1 CGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGT 531
* * *** *** ** * * * * * ** *
consensus_6596#0 CAGGAAG-ATGGCAGCCCATTCAT-CCCAGGTTAATTAAGAGTTAAGAAGCAAC-CTATC 1166
consensus_6596#2 CAGGAAG-ATGGCAGCCCATTCAT-CCCAGGTTAATTAAGAGTTAAGAAGCAAC-CTATC 319
consensus_6596#1 CGGGATGTACGGCGGCCGCTCGAAGCTCGGGGTCATCGACGGCTGCGGGATAGCTCCATC 591
* *** * * *** *** * * * * ** * ** * * * * * * * ***
consensus_6596#0 T-ATCTATCTATATATAGCCAGCATGAATTATAT----ATATCATCTCCCCG-----TCC 1216
consensus_6596#2 T-ATCTATCTATATATAGCCAGCATGAATTATAT----ATATCATCTCCCCG-----TCC 369
consensus_6596#1 TTACCCTTACACGGTCCGGTGCTACTACTCCCAGTACAACAACAACACCCGGAAGGATCT 651
* * * * * * * * * * * * ** * *** * **
consensus_6596#0 CTTTTTG-CATGTTGTGCAAA--ACCATACTTTGGAGT--TCTATATGTAATCGAATCGA 1271
consensus_6596#2 CTTTTTG-CATGTTGTGCAAA--ACCATACTTTGGNGT--TCTATATGTAATCGAATCGN 424
consensus_6596#1 GTTTCTGACTTAGTGTCCCATCTACCTTACCCTTATGTGGCTTATTTTTCAGTTGACCGC 711
*** ** * * *** * * *** *** * ** *** * * * * **
consensus_6596#0 GATCTTGATCTCTCGTCTTTTCATGATTAATTCG-------------------------- 1305
consensus_6596#2 GNTCTTAAAAAAAAAAAAAAAAA------------------------------------- 447
consensus_6596#1 TTATTTCGACCAACCTGACTTAGGCTTCATGGTGTTTTGCTGTTTCTCAGGTGGGTGTAA 771
**
consensus_6596#0 -------
consensus_6596#2 -------
consensus_6596#1 CTATTTT 778
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||