These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2209 fasta sequence [CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACCACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCTCAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGATCTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATA-CCCGATATATCAATGCT-GGGTAGAATTGTTACAATTTTA-TTTGTGTGTGTA-TGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGAAAAAGGAAAAT] [+] EMBL AK099553 [CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACCACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCTCAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGATCTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATA CCCGATATATCAATGCT GGGTAGAATTGTTACAATTTTA TTTGTGTGTGTA TGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGAAAAAGGAAAAT] [+] EMBL OS1321811 [ AAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGA CAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTG AACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTNC GCGGTTATGATGGTGTTGATTTTTAATA CCCGATATATCAATACTGGGGTAGGATTGTTACAATTTTATTTTGTGNGTTTATTGGC ACCATTATCA ] [+] EMBL AU223336 [ AGATGAAGATGGCAAAGCAGATAAANAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTNGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATACCCCGATATATCAATGCT GGGTAGAATTGTTACAATTTTA TTTGTGTGTGTA TGGCAACAATTATCAATTTTACATGAATAGTTNTGATTAGTTGAAAAAAAaaaaaa ] consensusID : consensus_6597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTGTTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNTGG] [+] EMBL AU065980 [AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTGTTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6597#0 CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACC 60 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 ACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCT 120 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGAT 180 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCAC 240 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 TGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTG 300 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 TGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCC 360 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTA 420 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 TCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTA 480 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTT 540 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATT 600 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATA 660 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 AGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAA 720 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGT 780 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 TTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATG 840 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 AAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATAT 900 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 ATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCAT 960 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGC 1020 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 TTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCA 1080 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGA 1140 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCT 1200 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAA 1260 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGAT 1320 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATT 1380 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 CCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAA 1440 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 AATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGAT 1500 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAAT 1560 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 AAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGA 1620 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAAC 1680 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTT 1740 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 GGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGC 1800 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 AAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAA 1860 consensus_6597#1 ------------------------------------------------------------ consensus_6597#0 ACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCC 1920 consensus_6597#1 --------AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCC 52 ********** ***************************************** consensus_6597#0 TACGGCGATTATGATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTG 1980 consensus_6597#1 TACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTG 112 ************ *********************************************** consensus_6597#0 TTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGAT 2040 consensus_6597#1 TTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGAT 172 ************************************************************ consensus_6597#0 TAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTG 2100 consensus_6597#1 TAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTG 232 ************************************************************ consensus_6597#0 ATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACC 2160 consensus_6597#1 ATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACC 292 ************************************************************ consensus_6597#0 TATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGA----AAAAGGAAAAT------- 2209 consensus_6597#1 TATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNT 352 ************ ************ * * *** ** ** consensus_6597#0 -- consensus_6597#1 GG 354 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||