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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence
[GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT]
[+] EMBL CB622565 [GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT]
[-] EMBL AU173398 [ tttTTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACAC ]
[-] EMBL AK059359 [ TAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATC ]
consensusID : consensus_6599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG]
[+] EMBL CA759551 [TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6599#0 GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 60
consensus_6599#1 ---TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 57
*** ****** **************************************
consensus_6599#0 CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 120
consensus_6599#1 CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 117
************************************************************
consensus_6599#0 GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 180
consensus_6599#1 GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 177
************************************************************
consensus_6599#0 GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 240
consensus_6599#1 GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 237
************************************************************
consensus_6599#0 GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 300
consensus_6599#1 GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 297
************************************************************
consensus_6599#0 CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 360
consensus_6599#1 CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 357
************************************************************
consensus_6599#0 CTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 420
consensus_6599#1 CTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 417
************************* **********************************
consensus_6599#0 AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 480
consensus_6599#1 AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 477
************************************************************
consensus_6599#0 AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 540
consensus_6599#1 AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 537
************************************************************
consensus_6599#0 AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 600
consensus_6599#1 AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 597
************************************************************
consensus_6599#0 CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAA 660
consensus_6599#1 CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTC-AA 656
********************************************************* **
consensus_6599#0 CTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCC 720
consensus_6599#1 CTAGAACTGCAA-CCATGCCAATGTATCCCATGCAG------------------------ 691
************ ***********************
consensus_6599#0 AGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAG 780
consensus_6599#1 ------------------------------------------------------------
consensus_6599#0 ATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT 830
consensus_6599#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||