These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence [GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT] [+] EMBL CB622565 [GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT] [-] EMBL AU173398 [ tttTTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACAC ] [-] EMBL AK059359 [ TAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATC ] consensusID : consensus_6599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG] [+] EMBL CA759551 [TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6599#0 GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 60 consensus_6599#1 ---TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 57 *** ****** ************************************** consensus_6599#0 CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 120 consensus_6599#1 CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 117 ************************************************************ consensus_6599#0 GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 180 consensus_6599#1 GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 177 ************************************************************ consensus_6599#0 GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 240 consensus_6599#1 GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 237 ************************************************************ consensus_6599#0 GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 300 consensus_6599#1 GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 297 ************************************************************ consensus_6599#0 CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 360 consensus_6599#1 CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 357 ************************************************************ consensus_6599#0 CTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 420 consensus_6599#1 CTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 417 ************************* ********************************** consensus_6599#0 AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 480 consensus_6599#1 AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 477 ************************************************************ consensus_6599#0 AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 540 consensus_6599#1 AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 537 ************************************************************ consensus_6599#0 AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 600 consensus_6599#1 AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 597 ************************************************************ consensus_6599#0 CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAA 660 consensus_6599#1 CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTC-AA 656 ********************************************************* ** consensus_6599#0 CTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCC 720 consensus_6599#1 CTAGAACTGCAA-CCATGCCAATGTATCCCATGCAG------------------------ 691 ************ *********************** consensus_6599#0 AGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAG 780 consensus_6599#1 ------------------------------------------------------------ consensus_6599#0 ATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT 830 consensus_6599#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||