Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 660 cluster # 660       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_660#0 length = 3389 sequences # 1  
 consensus_660#1 length = 630 sequences # 1  
consensusID : consensus_660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3389
fasta sequence 
                              [CTGTTAGGTACATTCCCAATTCCCCATCTACACTTGACACACACTACGCGGCTGAGAAGACGAAAAAGAAAAATAAAACGAAAAAAAAATAAAAGAAAAGAAAGAAACGATAGGGAAGAGAGATCCGGCGAAATGGCGGCGCCGCCACCGCCGGCGATGGAGCCGGAGATCGGCCCCGACGGCCTCGCCAGGGAGAACCCCGTCATCGCCTACACCGAGAAGGTGATTTTGGAGGAGCAGCTGCAGCTGAAGAAGTGAGTTGTATCTTCCTCACCTCCCTAAGTCACTTGCAGTTTCGTCTCTACTGTCTGCGATTCTTGGATCTGCATTGCCTTTCTTTATGTGAATCTGCATCTTTCCCACCACTGGAATTGATGAGAATTGAGGATGAGGCCACGAGAGAAACATAAATTAATTGGACTAGATCATGCATTTTTTTTCAGTTAAGATCATACATCTTTCTGGAATCATTTTCTGTCCGTCCCTGTCACCTACAATGATTTAGAGAGGAATGTGGGATTGAATTGTATGAGTGCGCACTGTGGTATGGACTTACATTTACCAAAGGAGCAAGGTTCTACTCGTTAGAGACAGGAAATACTTTAGCTATGTCTATTTTACTAGGAGCTTACTCAAAAATGTGTATGGTGGCATCCAGTAAGTCCCATTGATGTTAATTTTATAGACATGGGAGATGAGATGTAAATCCTGCATCAATGACATGAGATTCTAGGTCGTACATTGCTTTTATTAGCTTCTGTCCTTCTACGAAAAATGCTATCTTGATTTAGGGACATGTCTTAGTAGCCTGACTGTTAGCAAAATGCAGTTCACTGATGAATTGTGCGAGCGTTCGCCTTGCTCTTCCATTGGTTATGAATAAAGTAAATTCAACAGTAATTTTCTTCCTTTATTTATCATCAGTAATGGAATTATGTTTTGTCTTGTTATAATTATGATATTTTTACTCTGTTCCGTGTGAAGCTGATATATGATTTGATTTGATTTTAGCCTGTTTTACAGCTACGTCCTCAATTTCCCCGTTTTCTTTGATAACATTATGTTCCTAGAGATCCCCATGTTTTTTTAGCACAGGCAATGTTGTAATACCATACTTGGTGCATGTAGGTCTGTAGGGCTATGCATTCTTTTTCTGCACCTGTGCATATCATAAGGATCATAGGCTGATGCCAAGATAATATTTCTTCATATTTACCTTGAATTCTTGAATCCATTGCTTAGGTCATGGAGCCTTCTTGGATTTTGAGACATTAGAATCCATCCATTTTTCAATCAACATTAAGCAGATTTTAGAATCTTGACAGATGACAACGTTTGAGCTTGCCATTTCTGGGGACCTATTTAACATGGAAACTGGCAGCGATTTAGCATAAATCTATGTACGTTTAGTCAGGCATCATAGGTTACACCAATTTGCGCGTGTCAACTTTGTTGCTATGTTTTACGATTATGTTGTGTTCTGATTAGTTTAACTCATTTGTTTCATTATTACTCAAACTAAAAAGTTAGCACTGTTTCTCAGATACATTCAGGAGAACTATTCCAAAATTCGTGATGTTGAAAAGGAGCTAGAGAATCTGAGTTTAGAAATGAAACTAACAGCTGGGCCAAAGAAAGCAGCACTTGAGCATTTAAGAAAAAAGATTGAAATATCAACAGAGAGAATACGGTTGGCTAGGGTGAAAGAGGAACAGGCAAAGAAGGTTGAATCTGCTGACGTTTGACTTGAGTACAAATACTCTCTCTGTTCACGAATCACGAATACTTATTACTTTGGACCACTTTATTTGTTTACAGATACTCTACGTTTTTCGGAACCACAGTTTTCCATTTTGTCTACACATCCCACTTGTAGTGGAACATTATTTGGGGTTAGTTATTTGGGGGTAATTTGGTCATATTGGGTAAAAATACTAAATACTTGTGTTGGTAAAGGAGAAAGTATTTGTGAAAGGGAGTACATAATTTACCGACTACTTGGTATACATGTCCGTTTTTCTTTTAGTAGCTGTCGATCTCATGAATGGAATGAAAGGATGGAACTCCTTTGTCAAACACAAACAAACTCATGTTTTTTCACCAAAACTGTAGGTCTGTTATTAGTACATGACATTAGAATTAGTACAACTGTTAAACCCCTAATACACTGAATTTTTTAGATAAAGTGTTCTGTTGTAGTATTGGTGTTTGTGTTCCGAAATGCATGAGTACATTGAAAGAAGGTAAACTTTAAAGTTGTAATGAACGTTTTGTCTTCCTGCTAGTAAGTTATCGAACCAGTGTCATGTTTTTGCTCTGATTCTTCTTCTGTTAGGAAATACCAATCCTATATTGGCTTTGTCATCCTCTGTTTAGCAGATGTATGGTATGGTTACTAGGTAGTGTTGCTCGATACCCGAGCTTGCACCAGTATTAGTGTGTGAACTTTAGGGTCCAACTTGTAGCTGCACCTTCTCTATCCATTCTATATTTTGTTCGTTAAATATCTTGTATTATATTTCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTGTATTATATTTCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTCTATTTACTGATTGCTCTATCTGTTTTTTGTATTTTAGGCCTGGGAAGCTGCTGCACAAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTATGTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGTAAGTTCAGATCCCTGTGGTCATCAACCTGATCGAGTCCCTCATAAATTGTCGAAAATCTGTCCTTTCCTGATTCTCACTCTATGTAATTATCAGGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGATGCAGAAAGGAAGAGGAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATGTTGACATGTGTAGCAAAATATTCAAAGTGTAACTGCCAATACAGTAAAAGAGTTTATTTGATTATATATCGAATAACGTGTCAGTAATT]

[+] EMBL AK122170             [CTGTTAGGTACATTCCCAATTCCCCATCTACACTTGACACACACTACGCGGCTGAGAAGACGAAAAAGAAAAATAAAACGAAAAAAAAATAAAAGAAAAGAAAGAAACGATAGGGAAGAGAGATCCGGCGAAATGGCGGCGCCGCCACCGCCGGCGATGGAGCCGGAGATCGGCCCCGACGGCCTCGCCAGGGAGAACCCCGTCATCGCCTACACCGAGAAGGTGATTTTGGAGGAGCAGCTGCAGCTGAAGAAGTGAGTTGTATCTTCCTCACCTCCCTAAGTCACTTGCAGTTTCGTCTCTACTGTCTGCGATTCTTGGATCTGCATTGCCTTTCTTTATGTGAATCTGCATCTTTCCCACCACTGGAATTGATGAGAATTGAGGATGAGGCCACGAGAGAAACATAAATTAATTGGACTAGATCATGCATTTTTTTTCAGTTAAGATCATACATCTTTCTGGAATCATTTTCTGTCCGTCCCTGTCACCTACAATGATTTAGAGAGGAATGTGGGATTGAATTGTATGAGTGCGCACTGTGGTATGGACTTACATTTACCAAAGGAGCAAGGTTCTACTCGTTAGAGACAGGAAATACTTTAGCTATGTCTATTTTACTAGGAGCTTACTCAAAAATGTGTATGGTGGCATCCAGTAAGTCCCATTGATGTTAATTTTATAGACATGGGAGATGAGATGTAAATCCTGCATCAATGACATGAGATTCTAGGTCGTACATTGCTTTTATTAGCTTCTGTCCTTCTACGAAAAATGCTATCTTGATTTAGGGACATGTCTTAGTAGCCTGACTGTTAGCAAAATGCAGTTCACTGATGAATTGTGCGAGCGTTCGCCTTGCTCTTCCATTGGTTATGAATAAAGTAAATTCAACAGTAATTTTCTTCCTTTATTTATCATCAGTAATGGAATTATGTTTTGTCTTGTTATAATTATGATATTTTTACTCTGTTCCGTGTGAAGCTGATATATGATTTGATTTGATTTTAGCCTGTTTTACAGCTACGTCCTCAATTTCCCCGTTTTCTTTGATAACATTATGTTCCTAGAGATCCCCATGTTTTTTTAGCACAGGCAATGTTGTAATACCATACTTGGTGCATGTAGGTCTGTAGGGCTATGCATTCTTTTTCTGCACCTGTGCATATCATAAGGATCATAGGCTGATGCCAAGATAATATTTCTTCATATTTACCTTGAATTCTTGAATCCATTGCTTAGGTCATGGAGCCTTCTTGGATTTTGAGACATTAGAATCCATCCATTTTTCAATCAACATTAAGCAGATTTTAGAATCTTGACAGATGACAACGTTTGAGCTTGCCATTTCTGGGGACCTATTTAACATGGAAACTGGCAGCGATTTAGCATAAATCTATGTACGTTTAGTCAGGCATCATAGGTTACACCAATTTGCGCGTGTCAACTTTGTTGCTATGTTTTACGATTATGTTGTGTTCTGATTAGTTTAACTCATTTGTTTCATTATTACTCAAACTAAAAAGTTAGCACTGTTTCTCAGATACATTCAGGAGAACTATTCCAAAATTCGTGATGTTGAAAAGGAGCTAGAGAATCTGAGTTTAGAAATGAAACTAACAGCTGGGCCAAAGAAAGCAGCACTTGAGCATTTAAGAAAAAAGATTGAAATATCAACAGAGAGAATACGGTTGGCTAGGGTGAAAGAGGAACAGGCAAAGAAGGTTGAATCTGCTGACGTTTGACTTGAGTACAAATACTCTCTCTGTTCACGAATCACGAATACTTATTACTTTGGACCACTTTATTTGTTTACAGATACTCTACGTTTTTCGGAACCACAGTTTTCCATTTTGTCTACACATCCCACTTGTAGTGGAACATTATTTGGGGTTAGTTATTTGGGGGTAATTTGGTCATATTGGGTAAAAATACTAAATACTTGTGTTGGTAAAGGAGAAAGTATTTGTGAAAGGGAGTACATAATTTACCGACTACTTGGTATACATGTCCGTTTTTCTTTTAGTAGCTGTCGATCTCATGAATGGAATGAAAGGATGGAACTCCTTTGTCAAACACAAACAAACTCATGTTTTTTCACCAAAACTGTAGGTCTGTTATTAGTACATGACATTAGAATTAGTACAACTGTTAAACCCCTAATACACTGAATTTTTTAGATAAAGTGTTCTGTTGTAGTATTGGTGTTTGTGTTCCGAAATGCATGAGTACATTGAAAGAAGGTAAACTTTAAAGTTGTAATGAACGTTTTGTCTTCCTGCTAGTAAGTTATCGAACCAGTGTCATGTTTTTGCTCTGATTCTTCTTCTGTTAGGAAATACCAATCCTATATTGGCTTTGTCATCCTCTGTTTAGCAGATGTATGGTATGGTTACTAGGTAGTGTTGCTCGATACCCGAGCTTGCACCAGTATTAGTGTGTGAACTTTAGGGTCCAACTTGTAGCTGCACCTTCTCTATCCATTCTATATTTTGTTCGTTAAATATCTTGTATTATATTTCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTGTATTATATTTCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTCTATTTACTGATTGCTCTATCTGTTTTTTGTATTTTAGGCCTGGGAAGCTGCTGCACAAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTATGTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGTAAGTTCAGATCCCTGTGGTCATCAACCTGATCGAGTCCCTCATAAATTGTCGAAAATCTGTCCTTTCCTGATTCTCACTCTATGTAATTATCAGGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGATGCAGAAAGGAAGAGGAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATGTTGACATGTGTAGCAAAATATTCAAAGTGTAACTGCCAATACAGTAAAAGAGTTTATTTGATTATATATCGAATAACGTGTCAGTAATT]




>consensus_660#0
CTGTTAGGTACATTCCCAATTCCCCATCTACACTTGACACACACTACGCGGCTGAGAAGA
CGAAAAAGAAAAATAAAACGAAAAAAAAATAAAAGAAAAGAAAGAAACGATAGGGAAGAG
AGATCCGGCGAAATGGCGGCGCCGCCACCGCCGGCGATGGAGCCGGAGATCGGCCCCGAC
GGCCTCGCCAGGGAGAACCCCGTCATCGCCTACACCGAGAAGGTGATTTTGGAGGAGCAG
CTGCAGCTGAAGAAGTGAGTTGTATCTTCCTCACCTCCCTAAGTCACTTGCAGTTTCGTC
TCTACTGTCTGCGATTCTTGGATCTGCATTGCCTTTCTTTATGTGAATCTGCATCTTTCC
CACCACTGGAATTGATGAGAATTGAGGATGAGGCCACGAGAGAAACATAAATTAATTGGA
CTAGATCATGCATTTTTTTTCAGTTAAGATCATACATCTTTCTGGAATCATTTTCTGTCC
GTCCCTGTCACCTACAATGATTTAGAGAGGAATGTGGGATTGAATTGTATGAGTGCGCAC
TGTGGTATGGACTTACATTTACCAAAGGAGCAAGGTTCTACTCGTTAGAGACAGGAAATA
CTTTAGCTATGTCTATTTTACTAGGAGCTTACTCAAAAATGTGTATGGTGGCATCCAGTA
AGTCCCATTGATGTTAATTTTATAGACATGGGAGATGAGATGTAAATCCTGCATCAATGA
CATGAGATTCTAGGTCGTACATTGCTTTTATTAGCTTCTGTCCTTCTACGAAAAATGCTA
TCTTGATTTAGGGACATGTCTTAGTAGCCTGACTGTTAGCAAAATGCAGTTCACTGATGA
ATTGTGCGAGCGTTCGCCTTGCTCTTCCATTGGTTATGAATAAAGTAAATTCAACAGTAA
TTTTCTTCCTTTATTTATCATCAGTAATGGAATTATGTTTTGTCTTGTTATAATTATGAT
ATTTTTACTCTGTTCCGTGTGAAGCTGATATATGATTTGATTTGATTTTAGCCTGTTTTA
CAGCTACGTCCTCAATTTCCCCGTTTTCTTTGATAACATTATGTTCCTAGAGATCCCCAT
GTTTTTTTAGCACAGGCAATGTTGTAATACCATACTTGGTGCATGTAGGTCTGTAGGGCT
ATGCATTCTTTTTCTGCACCTGTGCATATCATAAGGATCATAGGCTGATGCCAAGATAAT
ATTTCTTCATATTTACCTTGAATTCTTGAATCCATTGCTTAGGTCATGGAGCCTTCTTGG
ATTTTGAGACATTAGAATCCATCCATTTTTCAATCAACATTAAGCAGATTTTAGAATCTT
GACAGATGACAACGTTTGAGCTTGCCATTTCTGGGGACCTATTTAACATGGAAACTGGCA
GCGATTTAGCATAAATCTATGTACGTTTAGTCAGGCATCATAGGTTACACCAATTTGCGC
GTGTCAACTTTGTTGCTATGTTTTACGATTATGTTGTGTTCTGATTAGTTTAACTCATTT
GTTTCATTATTACTCAAACTAAAAAGTTAGCACTGTTTCTCAGATACATTCAGGAGAACT
ATTCCAAAATTCGTGATGTTGAAAAGGAGCTAGAGAATCTGAGTTTAGAAATGAAACTAA
CAGCTGGGCCAAAGAAAGCAGCACTTGAGCATTTAAGAAAAAAGATTGAAATATCAACAG
AGAGAATACGGTTGGCTAGGGTGAAAGAGGAACAGGCAAAGAAGGTTGAATCTGCTGACG
TTTGACTTGAGTACAAATACTCTCTCTGTTCACGAATCACGAATACTTATTACTTTGGAC
CACTTTATTTGTTTACAGATACTCTACGTTTTTCGGAACCACAGTTTTCCATTTTGTCTA
CACATCCCACTTGTAGTGGAACATTATTTGGGGTTAGTTATTTGGGGGTAATTTGGTCAT
ATTGGGTAAAAATACTAAATACTTGTGTTGGTAAAGGAGAAAGTATTTGTGAAAGGGAGT
ACATAATTTACCGACTACTTGGTATACATGTCCGTTTTTCTTTTAGTAGCTGTCGATCTC
ATGAATGGAATGAAAGGATGGAACTCCTTTGTCAAACACAAACAAACTCATGTTTTTTCA
CCAAAACTGTAGGTCTGTTATTAGTACATGACATTAGAATTAGTACAACTGTTAAACCCC
TAATACACTGAATTTTTTAGATAAAGTGTTCTGTTGTAGTATTGGTGTTTGTGTTCCGAA
ATGCATGAGTACATTGAAAGAAGGTAAACTTTAAAGTTGTAATGAACGTTTTGTCTTCCT
GCTAGTAAGTTATCGAACCAGTGTCATGTTTTTGCTCTGATTCTTCTTCTGTTAGGAAAT
ACCAATCCTATATTGGCTTTGTCATCCTCTGTTTAGCAGATGTATGGTATGGTTACTAGG
TAGTGTTGCTCGATACCCGAGCTTGCACCAGTATTAGTGTGTGAACTTTAGGGTCCAACT
TGTAGCTGCACCTTCTCTATCCATTCTATATTTTGTTCGTTAAATATCTTGTATTATATT
TCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTGTATTATATTTCTATCTTCTGTT
CTTAAGCCTTAAGCTGTTTCCTTTCTATTTACTGATTGCTCTATCTGTTTTTTGTATTTT
AGGCCTGGGAAGCTGCTGCACAAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTAT
GTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGG
AGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGTAA
GTTCAGATCCCTGTGGTCATCAACCTGATCGAGTCCCTCATAAATTGTCGAAAATCTGTC
CTTTCCTGATTCTCACTCTATGTAATTATCAGGGTATGAATACTGCACAGCATGCAACCA
CAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAA
ATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGATGCAGAAA
GGAAGAGGAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGG
GAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACAT
GATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCC
AGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATG
TTGACATGTGTAGCAAAATATTCAAAGTGTAACTGCCAATACAGTAAAAGAGTTTATTTG
ATTATATATCGAATAACGTGTCAGTAATT

consensusID : consensus_660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence 
                              [ATATCACCAGAGAGAATACGGTTGGCTAGGGTGAAAGAGGACCAGGCAAAGAAGGCCTGGGAAGCTGCTGCNCCAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTATGTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGGTGCAGAAAGGAAGAGAAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATGTTGACATGTGAGCA]

[-] EMBL CA763296             [ATATCACCAGAGAGAATACGGTTGGCTAGGGTGAAAGAGGACCAGGCAAAGAAGGCCTGGGAAGCTGCTGCNCCAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTATGTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGGTGCAGAAAGGAAGAGAAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATGTTGACATGTGAGCA]




>consensus_660#1
ATATCACCAGAGAGAATACGGTTGGCTAGGGTGAAAGAGGACCAGGCAAAGAAGGCCTGG
GAAGCTGCTGCNCCAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTATGTGATGAT
CTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAG
AAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGGTATGAATACT
GCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAAT
GCACCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGA
CCTGCCGGTGCAGAAAGGAAGAGAAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTG
ATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGAT
GTAGATGGCCGTACATGATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAA
TTATCTCAGGAGTTCCAGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGT
TTACCAAATATATATGTTGACATGTGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_660#0      CTGTTAGGTACATTCCCAATTCCCCATCTACACTTGACACACACTACGCGGCTGAGAAGA 60
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CGAAAAAGAAAAATAAAACGAAAAAAAAATAAAAGAAAAGAAAGAAACGATAGGGAAGAG 120
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      AGATCCGGCGAAATGGCGGCGCCGCCACCGCCGGCGATGGAGCCGGAGATCGGCCCCGAC 180
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GGCCTCGCCAGGGAGAACCCCGTCATCGCCTACACCGAGAAGGTGATTTTGGAGGAGCAG 240
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CTGCAGCTGAAGAAGTGAGTTGTATCTTCCTCACCTCCCTAAGTCACTTGCAGTTTCGTC 300
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TCTACTGTCTGCGATTCTTGGATCTGCATTGCCTTTCTTTATGTGAATCTGCATCTTTCC 360
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CACCACTGGAATTGATGAGAATTGAGGATGAGGCCACGAGAGAAACATAAATTAATTGGA 420
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CTAGATCATGCATTTTTTTTCAGTTAAGATCATACATCTTTCTGGAATCATTTTCTGTCC 480
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GTCCCTGTCACCTACAATGATTTAGAGAGGAATGTGGGATTGAATTGTATGAGTGCGCAC 540
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TGTGGTATGGACTTACATTTACCAAAGGAGCAAGGTTCTACTCGTTAGAGACAGGAAATA 600
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CTTTAGCTATGTCTATTTTACTAGGAGCTTACTCAAAAATGTGTATGGTGGCATCCAGTA 660
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      AGTCCCATTGATGTTAATTTTATAGACATGGGAGATGAGATGTAAATCCTGCATCAATGA 720
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CATGAGATTCTAGGTCGTACATTGCTTTTATTAGCTTCTGTCCTTCTACGAAAAATGCTA 780
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TCTTGATTTAGGGACATGTCTTAGTAGCCTGACTGTTAGCAAAATGCAGTTCACTGATGA 840
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTGTGCGAGCGTTCGCCTTGCTCTTCCATTGGTTATGAATAAAGTAAATTCAACAGTAA 900
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TTTTCTTCCTTTATTTATCATCAGTAATGGAATTATGTTTTGTCTTGTTATAATTATGAT 960
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTTTTACTCTGTTCCGTGTGAAGCTGATATATGATTTGATTTGATTTTAGCCTGTTTTA 1020
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CAGCTACGTCCTCAATTTCCCCGTTTTCTTTGATAACATTATGTTCCTAGAGATCCCCAT 1080
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GTTTTTTTAGCACAGGCAATGTTGTAATACCATACTTGGTGCATGTAGGTCTGTAGGGCT 1140
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATGCATTCTTTTTCTGCACCTGTGCATATCATAAGGATCATAGGCTGATGCCAAGATAAT 1200
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTTCTTCATATTTACCTTGAATTCTTGAATCCATTGCTTAGGTCATGGAGCCTTCTTGG 1260
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTTTGAGACATTAGAATCCATCCATTTTTCAATCAACATTAAGCAGATTTTAGAATCTT 1320
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GACAGATGACAACGTTTGAGCTTGCCATTTCTGGGGACCTATTTAACATGGAAACTGGCA 1380
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GCGATTTAGCATAAATCTATGTACGTTTAGTCAGGCATCATAGGTTACACCAATTTGCGC 1440
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GTGTCAACTTTGTTGCTATGTTTTACGATTATGTTGTGTTCTGATTAGTTTAACTCATTT 1500
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GTTTCATTATTACTCAAACTAAAAAGTTAGCACTGTTTCTCAGATACATTCAGGAGAACT 1560
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTCCAAAATTCGTGATGTTGAAAAGGAGCTAGAGAATCTGAGTTTAGAAATGAAACTAA 1620
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CAGCTGGGCCAAAGAAAGCAGCACTTGAGCATTTAAGAAAAAAGATTGAAATATCAACAG 1680
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      AGAGAATACGGTTGGCTAGGGTGAAAGAGGAACAGGCAAAGAAGGTTGAATCTGCTGACG 1740
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TTTGACTTGAGTACAAATACTCTCTCTGTTCACGAATCACGAATACTTATTACTTTGGAC 1800
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CACTTTATTTGTTTACAGATACTCTACGTTTTTCGGAACCACAGTTTTCCATTTTGTCTA 1860
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CACATCCCACTTGTAGTGGAACATTATTTGGGGTTAGTTATTTGGGGGTAATTTGGTCAT 1920
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTGGGTAAAAATACTAAATACTTGTGTTGGTAAAGGAGAAAGTATTTGTGAAAGGGAGT 1980
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ACATAATTTACCGACTACTTGGTATACATGTCCGTTTTTCTTTTAGTAGCTGTCGATCTC 2040
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATGAATGGAATGAAAGGATGGAACTCCTTTGTCAAACACAAACAAACTCATGTTTTTTCA 2100
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CCAAAACTGTAGGTCTGTTATTAGTACATGACATTAGAATTAGTACAACTGTTAAACCCC 2160
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TAATACACTGAATTTTTTAGATAAAGTGTTCTGTTGTAGTATTGGTGTTTGTGTTCCGAA 2220
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATGCATGAGTACATTGAAAGAAGGTAAACTTTAAAGTTGTAATGAACGTTTTGTCTTCCT 2280
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      GCTAGTAAGTTATCGAACCAGTGTCATGTTTTTGCTCTGATTCTTCTTCTGTTAGGAAAT 2340
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ACCAATCCTATATTGGCTTTGTCATCCTCTGTTTAGCAGATGTATGGTATGGTTACTAGG 2400
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TAGTGTTGCTCGATACCCGAGCTTGCACCAGTATTAGTGTGTGAACTTTAGGGTCCAACT 2460
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TGTAGCTGCACCTTCTCTATCCATTCTATATTTTGTTCGTTAAATATCTTGTATTATATT 2520
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      TCTATCTTCTGTTCTTAAGCCTTAAGCTGTTTCCTTTGTATTATATTTCTATCTTCTGTT 2580
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CTTAAGCCTTAAGCTGTTTCCTTTCTATTTACTGATTGCTCTATCTGTTTTTTGTATTTT 2640
consensus_660#1      ------ATATCACCAGAGAGAATACGGTTGGCTAG--GGTGAAAGAGGACCAGGCAAAGA 52
                              * * * *      * *  **  **    * *  *   *      * *    

consensus_660#0      AGGCCTGGGAAGCTGCTGCACAAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTAT 2700
consensus_660#1      AGGCCTGGGAAGCTGCTGCNCCAATTGTTAAAGACGAAGAGAATGCTAAGCAGAATCTAT 112
                     ******************* * **************************************

consensus_660#0      GTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGG 2760
consensus_660#1      GTGATGATCTGAACCGGCTGGTCCAAGAGAGCGCCGCTTCCCAATTTTCAAGATTAGAGG 172
                     ************************************************************

consensus_660#0      AGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTGTAA 2820
consensus_660#1      AGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATGTCTCTG--- 229
                     *********************************************************   

consensus_660#0      GTTCAGATCCCTGTGGTCATCAACCTGATCGAGTCCCTCATAAATTGTCGAAAATCTGTC 2880
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      CTTTCCTGATTCTCACTCTATGTAATTATCAGGGTATGAATACTGCACAGCATGCAACCA 2940
consensus_660#1      ---------------------------------GTATGAATACTGCACAGCATGCAACCA 256
                                                      ***************************

consensus_660#0      CAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAA 3000
consensus_660#1      CAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCACCTAGCCCTGCAA 316
                     ************************************************************

consensus_660#0      ATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGATGCAGAAA 3060
consensus_660#1      ATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGGTGCAGAAA 376
                     *************************************************** ********

consensus_660#0      GGAAGAGGAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGG 3120
consensus_660#1      GGAAGAGAAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGG 436
                     ******* ****************************************************

consensus_660#0      GAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACAT 3180
consensus_660#1      GAAGAGGAAGTTCAGGGTCAGGATGGACAGGTGCTGGGTTTGATGTAGATGGCCGTACAT 496
                     ************************************************************

consensus_660#0      GATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCC 3240
consensus_660#1      GATTCTAGGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTATCTCAGGAGTTCC 556
                     ************************************************************

consensus_660#0      AGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATG 3300
consensus_660#1      AGGGCAAACAACAGTGAGAATGTAATGCATTATTGATTATTTGTTTACCAAATATATATG 616
                     ************************************************************

consensus_660#0      TTGACATGTGTAGCAAAATATTCAAAGTGTAACTGCCAATACAGTAAAAGAGTTTATTTG 3360
consensus_660#1      TTGACATGTG-AGCA--------------------------------------------- 630
                     ********** ****                                             

consensus_660#0      ATTATATATCGAATAACGTGTCAGTAATT 3389
consensus_660#1      -----------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)