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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 826 fasta sequence
[GCTGGTTTGCTATTAACACTTTAATTTTGCATGCAGCAATTAAGGTGTTAATTAATATATATAATTAAGCTTTAAGCTCATTAGTTTACCGACGATGGAAGTGGCCACCAATACGGCGACACGATCGCCGGTGAAGCTAATGCTGGTGCTGACACTGTCGCCGGCGAGCAAGGTGATCGCCAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCAGTGCCGGACATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCGGCCGCGGGTGCGCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGTCAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGATATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTAATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATT]
[+] EMBL AK105226 [GCTGGTTTGCTATTAACACTTTAATTTTGCATGCAGCAATTAAGGTGTTAATTAATATATATAATTAAGCTTTAAGCTCATTAGTTTACCGACGATGGAAGTGGCCACCAATACGGCGACACGATCGCCGGTGAAGCTAATGCTGGTGCTGACACTGTCGCCGGCGAGCAAGGTGATCGCCAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCAGTGCCGGACATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCGGCCGCGGGTGCGCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGTCAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGATATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTAATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATT]
[+] EMBL AK062491 [ CTGGTTTGCTATTAACACTTTAATTTTGCATGCAGCAATTAAGGTGTTAATTAATATATATAATTAAGCTTTAAGCTCATTAGTTTACCGACGATGGAAGTGGCCACCAATACGGCGACACGATCGCCGGTGAAGCTAATGCTGGTGCTGACACTGTCGCCGGCGAGCAAGGTGATCGCCAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCAGTGCCGGACATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCGGCCGCGGGTGCGCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGT ]
[+] EMBL AY305866 [ ACGATGGAAGTGGCCACCAATACGGCGACACGATCGCCGGTGAAGCTAATGCTGGTGCTGACACTGTCGCCGGCGAGCAAGGTGATCGCCAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCAGTGCCGGACATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCGGCCGCGGGTGCGCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGGCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGA CGGCGGCGGCGGCGGCGACGACAATGTCCGGCTCCTCGTCGGAAGAGCGT GACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAA ]
consensusID : consensus_6601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[AAAAGCCCCCAACGCGCACACTCCCGGGAAAATAATGGTGCCCCATTTCCCGGAACAAGGTATCCAAGGGGGGGGGGGTTAAGGGGGGCCCTTAAAGGGGGCGTTTCAAGTCCGACAAGGGGCGCGGTTCTCCAAGTTCAGGCTTTTNGGGGCCACCGGACCAGCCACAAACGGCCGCGGGTTGCGGGCNGANGGCCTTGACTTCCTCCTNGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGTCAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGATATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTAATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATTGTATTCGTTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTCTCTCTC]
[-] EMBL AW155329 [AAAAGCCCCCAACGCGCACACTCCCGGGAAAATAATGGTGCCCCATTTCCCGGAACAAGGTATCCAAGGGGGGGGGGGTTAAGGGGGGCCCTTAAAGGGGGCGTTTCAAGTCCGACAAGGGGCGCGGTTCTCCAAGTTCAGGCTTTTNGGGGCCACCGGACCAGCCACAAACGGCCGCGGGTTGCGGGCNGANGGCCTTGACTTCCTCCTNGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGTCAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGATATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTAATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATTGTATTCGTTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTCTCTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6601#0 GCTGGTTTGCTATTAACACTTTAATTTTGCATGCAGCAATTAAGGTGTTAATTAATATAT 60
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 ATAATTAAGCTTTAAGCTCATTAGTTTACCGACGATGGAAGTGGCCACCAATACGGCGAC 120
consensus_6601#1 ---------------------------------------AAAAGCCCCCAACGCG----C 17
* *** **** ** *
consensus_6601#0 ACGATCGCCGGTGAAGCTAATGCTGGTGCTGACACTGTCGCCGGCGAGCAAGGTGATCGC 180
consensus_6601#1 ACACTC-CCGGGAAA----ATAATGGTGCC----CCATTTCCCG-GAACAAGGTAT---C 64
** ** **** ** ** ****** * * ** * ** ****** *
consensus_6601#0 CAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCAGTGCCGGAC 240
consensus_6601#1 CAAGGGGGGGG--GGGTTAAGGGGGGC---CCTTAAAGGGGGCG--TTTCAA-GTCCGAC 116
****** ** * ** * * * *** *** * ** **** ** ** * * ***
consensus_6601#0 ATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCG 300
consensus_6601#1 AAG-GGGCG-CGGTTCTCCAAGTTC-AGGCTTTTNGGGGCCACCGGACCAGCCACAAACG 173
* * ***** ********** **** ***** * * ******************** **
consensus_6601#0 GCCGCGGGT-GCGCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCG 359
consensus_6601#1 GCCGCGGGTTGCGGGCNGANGGCCTTGACTTCCTCCTNGGCGCGCGCCCCGGCAAGCTCG 233
********* *** ** ** ********* ******* **********************
consensus_6601#0 GCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCG 419
consensus_6601#1 GCGCCGGCGGCGCCTCGACGCCGGTAGTGCACCGGTGCGACATGTGCGGCAAGGTGTTCG 293
************************************************************
consensus_6601#0 CCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATG 479
consensus_6601#1 CCACCGGCCAGGCGCTCGGCGGCCACATGCGCCGCCACCGGCCGCTGGTGAGTCGTAATG 353
************************************************************
consensus_6601#0 GCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCT 539
consensus_6601#1 GCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGGCGGCGACAATGTCCGGCTCCT 413
************************************************************
consensus_6601#0 CGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACT 599
consensus_6601#1 CGTCGGAAGAGCGTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACT 473
************************************************************
consensus_6601#0 TTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGT 659
consensus_6601#1 TTTTGTGAGTGGCTAATGGACAAATCAATATATGAATTGAATAAAACCAGTGATTAATGT 533
************************************************************
consensus_6601#0 CAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGA 719
consensus_6601#1 CAATAATAATTAAGTTTGTTCTGGAGTGGTATACAAACACGCAACATGCTTATAGCTAGA 593
************************************************************
consensus_6601#0 TATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTA 779
consensus_6601#1 TATATATACACGTATACGCCACAAGATACAATACCAATTAAGTTCGTCTTTGATTTTGTA 653
************************************************************
consensus_6601#0 ATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATT------------- 826
consensus_6601#1 ATGTTCAATTATATTTTTTCAATGATTAAATACACGTGATTTTAATTGTATTCGTTCAAA 713
***********************************************
consensus_6601#0 -----------------------------------------
consensus_6601#1 AAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCTCTCTCTC 754
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||