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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 934 fasta sequence
[ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGNCTACGAGACCGTCAACTCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCATCGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGCTCCAACCGTACCAATGGCCCCGGGAGGCTTAGTGTGACCAAACAATCCGTGTCAACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGACGACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCGGCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCGCGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTGGTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT]
[+] EMBL AW155547 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGNCTACGAGACCGTCAACTCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCATCGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGCTCCAACCGTACCAATGGCCCCGGGAGGCTTAGTGTGACCAAACAATCCGTGTCAACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGACGACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCGGCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCGCGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTGGTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT]
consensusID : consensus_6604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence
[ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGCCTACGAGACCGTCACCTCGTGCGCCCNCACTGTCACCAACTGCCGGCCTCGTCGACCGTCGCAGGCTCAGCATCNGCACCCTTGACGCCTCGACCGCTACACCANCTCGTNCAGACCATTNACTCGTGCGCTTCCACGTNACCACTGCCCGGCAGGCCTACGTGTGACCAACACTTCTCGCTCAACACCTTTGCCGTGACGAACANAACACGGAACGCACGCGGTTCCTCACTGAAGACGGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCGGTCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTAACACAATCCTCCAGGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGCACCTCCGCTTCCTCTTGGTTTTTTTTCCACCCCACCGTGTGGTGTG]
[+] EMBL AW155546 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGCCTACGAGACCGTCACCTCGTGCGCCCNCACTGTCACCAACTGCCGGCCTCGTCGACCGTCGCAGGCTCAGCATCNGCACCCTTGACGCCTCGACCGCTACACCANCTCGTNCAGACCATTNACTCGTGCGCTTCCACGTNACCACTGCCCGGCAGGCCTACGTGTGACCAACACTTCTCGCTCAACACCTTTGCCGTGACGAACANAACACGGAACGCACGCGGTTCCTCACTGAAGACGGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCGGTCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTAACACAATCCTCCAGGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGCACCTCCGCTTCCTCTTGGTTTTTTTTCCACCCCACCGTGTGGTGTG]
consensusID : consensus_6604#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGGTG-CCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACCTGTTGCGCCCCCACTTGT-ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCATTGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGCTCCCACCGTCACCAACTGCCCCGGCAAGCCCTACGTNGTGACCCAGACCATACCCGTCTTCACCACCCTCTGCCCGGTGACCGAGACCAAGAG]
[+] EMBL AW155374 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGGTG CCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACCTGTTGCGCCCCCACTTGT ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCATTGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGCTCCCACCGTCACCAACTGCCCCGGCAAGCCCTACGTNGTGACCCAGACCATACCCGTCTTCACCACCCTCTGCCCGGTGACCGAGACCAAGAG]
[+] EMBL AW155372 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTG NCGNTGNCCACACCAACCC TGGCGGCTCGAACGGTTACAGGAACGGCT TACAAAACGTTAACTTGTGGCGCCCCCA TTGTAACCAACTGCCCGGCCTCGTCAACCGTCGT CGGTTCAACATTTGCACCCTGACGCCCTCGACCGTTTACACCACCTCGGTCC GACCATAACC NGTGCGCT CCACCGT NCCAACTTGCCCGG AAG CCTACGT GTGACCCA AACAT CCCGT TCCA CAACCTCTGGCC GTGACC AGACCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6604#0 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTC 60
consensus_6604#2 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTC 60
consensus_6604#1 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTC 60
************************************* **********************
consensus_6604#0 CTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120
consensus_6604#2 CTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120
consensus_6604#1 CTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120
*** *******************************************************
consensus_6604#0 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180
consensus_6604#2 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180
consensus_6604#1 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180
************************************************************
consensus_6604#0 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240
consensus_6604#2 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240
consensus_6604#1 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240
************************************************************
consensus_6604#0 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300
consensus_6604#2 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300
consensus_6604#1 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300
************************************************************
consensus_6604#0 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360
consensus_6604#2 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360
consensus_6604#1 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360
************************************************************
consensus_6604#0 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCT 420
consensus_6604#2 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGG 420
consensus_6604#1 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCT 420
*******************************************************
consensus_6604#0 GCCCACACCA-CCCCTGCCGGCTCGACCGTCTACAGCACCGNCTAC--GAGACCGTCAAC 477
consensus_6604#2 TGCCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACC 480
consensus_6604#1 GCCCACACCA-CCCCTGCCGGCTCGACCGTCTACAGCACCGCCTAC--GAGACCGTCACC 477
******** *** ****** * ** ** ** * * ** *** * ***** * *
consensus_6604#0 TCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCAT 537
consensus_6604#2 TGTTGCGCCCCCACTTGT-ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCAT 539
consensus_6604#1 TCGTGCGCCCNCACT-GTCACCAACTGCC-GGCCTCGTCGACCGTCG-CAGGCTCAGCAT 534
* ******* **** ** ********** ** ***** ******** ** *******
consensus_6604#0 CGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGC 597
consensus_6604#2 TGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGC 599
consensus_6604#1 CNGCACCCTTGACGCCTCGACC-GCTACACCANCTCG-TNCAGACCATTNACTCGTGCGC 592
****** *** **** ******* ** * * **** ** ** ******
consensus_6604#0 TCCAACCGT-ACCAATGGCCCCGGGAGGCTTA-GTGTGA----CCAAACAATCCGTGTCA 651
consensus_6604#2 TCCCACCGTCACCAACTGCCCCGGCAAGCCCT-ACGTNGTGACCCAGACCATACCCGTCT 658
consensus_6604#1 TTCCAC-GTNACCACTG--CCCGGCAGGCCTACGTGTGA----CCAACACTTCTCGCTCA 645
* * ** ** **** ***** * ** ** *** * **
consensus_6604#0 ACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGAC 711
consensus_6604#2 TCACCACCCTCTGCCCGGTGACCGAGACCAAGAG-------------------------- 692
consensus_6604#1 ACACCT-TTGCCGTGACG-AACANA-ACACGGAACGCACGCGGTTCCT--CACTGAAGAC 700
**** * * * ** * ** **
consensus_6604#0 GACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCG 771
consensus_6604#2 ------------------------------------------------------------
consensus_6604#1 GGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCG-G 759
consensus_6604#0 GCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCG 831
consensus_6604#2 ------------------------------------------------------------
consensus_6604#1 TCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTA-----ACACAATCCTCCA 814
consensus_6604#0 CGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTG 891
consensus_6604#2 ------------------------------------------------------------
consensus_6604#1 GGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGC 874
consensus_6604#0 GTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT---- 934
consensus_6604#2 -----------------------------------------------
consensus_6604#1 ACCTCCGCTTCCTCTTG-GTTTTTTTTCCACCCCACCGTGTGGTGTG 920
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||