These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1765 fasta sequence [TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCTTTCTTGTATGAA] [+] EMBL AK062188 [TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCCCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCT ] [+] EMBL CF276973 [ CCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTT ] [+] EMBL AK098868 [ CGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGACTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCTTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCTTTCTTGTATGAA] consensusID : consensus_6607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA] [+] EMBL BQ060183 [CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6607#0 TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTC 60 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 ATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAG 120 consensus_6607#1 -----------CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAG 49 * * ** *********************************** consensus_6607#0 ATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGG 180 consensus_6607#1 ATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGG 109 ************************************************************ consensus_6607#0 CAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAAC 240 consensus_6607#1 CAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAAC 169 ************************************************************ consensus_6607#0 AAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGC 300 consensus_6607#1 AAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGC 229 ************************************************************ consensus_6607#0 TCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAG 360 consensus_6607#1 TCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAG 289 ************************************************************ consensus_6607#0 TATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAG 420 consensus_6607#1 TATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAG 349 ************************************************************ consensus_6607#0 AATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTG 480 consensus_6607#1 AATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA------- 402 ************************************** ** ** *** * consensus_6607#0 TATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAA 540 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTT 600 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 GGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAA 660 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 AGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCAC 720 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGAC 780 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 GCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGAC 840 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGA 900 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACT 960 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATA 1020 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAAC 1080 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAG 1140 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACA 1200 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 AAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATG 1260 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 AGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAG 1320 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 CCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGG 1380 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGC 1440 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTA 1500 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGG 1560 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 GGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTT 1620 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 TATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTAT 1680 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 AATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAA 1740 consensus_6607#1 ------------------------------------------------------------ consensus_6607#0 AAAAAGATGAGCTTTCTTGTATGAA 1765 consensus_6607#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||