These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 980 fasta sequence [GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCGCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC-GCTCATTCGT-CCCGCTAATACAACAAACGGACAAGGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGATGAGGAGACGGCGTACGGGCATTACATCTAGGCGGAGGTCGACGGCGGCGCAGGCCGCGATGTGATGGAGTT-CTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCACCACTG-CGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTATTACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAATGCTAATTTAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK067320 [GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCGCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC GCTCATTCGT CCCGCTAATACAACAAACGGACAAGGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGATGAGGAGACGGCGTACGGGCATTACATCTAGGCGGAGGTCGACGGCGGCGCAGGCCGCGATGTGATGGAGTT CTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCACCACTG CGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTATTACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAATGCTA ] [+] EMBL AU101289 [ aATGCGTGTCCNCAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCCTCCCCGGTTCA TCGTCCCCGCTAATAC ACCAACGGACAAGGCCGCCGCTTCGCTGCGCGAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGACGAGGAGACGGCGTACGGGCACTACATCCAGGCGGAGGTCGACGGCGGCGCAGGCCGCGACGTGATGGAGTTCCTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTCATCTTCGTCTACCCCTTCACCACTGCCGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCCGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAATCTATTATTACTACTAAGTAGTACTAGTAGCCNCCGATATATATACNCAACAAATGTATTAATCAAAATGCTAATTTAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGCGGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAAGCCTGCAGCCGCCGTNCACCCNTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACCAACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGCNGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAACGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCAGGACTCNCGGTGCAGTTCATGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG] [+] EMBL C73493 [AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGCGGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAAGCCTGCAGCCGCCGTNCACCCNTTACTCC ] [+] EMBL CA753085 [ CATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCT GGCACCAACGTGAAGAAGCC GCAGCCGCCGTCCACCCCTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACCAACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGCNGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAACGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCAGGACTCNCGGTGCAGTTCATGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6610#0 GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGA 60 consensus_6610#1 --------------AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGA 46 * ******************************************* consensus_6610#0 AGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGC 120 consensus_6610#1 AGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGC 106 ********************* *** **************** ***************** consensus_6610#0 AACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGC 180 consensus_6610#1 AGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGC 166 * ************************* ************** ************** ** consensus_6610#0 GGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGG-CACCAACGTGAAGAA 239 consensus_6610#1 GGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAA 226 ***************** ******************* *** *************** consensus_6610#0 GCC-GCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCG 298 consensus_6610#1 GCCTGCAGCCGCCGTNCACCCNTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCG 286 *** *********** ***** ****** ******************************* consensus_6610#0 ACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACC 358 consensus_6610#1 ACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACC 346 ******** *************************** *********************** consensus_6610#0 CCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC-GCTCATTCGTCCC-GCTAATACAAC 416 consensus_6610#1 CCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACC 406 ***************** ****** *** ***** ****** * **** *** ***** * consensus_6610#0 AAACGGACAA-GGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAG-AGGAATGC 474 consensus_6610#1 AACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGC 466 ** ******* ************ **** ************ ******** ******** consensus_6610#0 GG-TGATCAAAGCCGATGAGGA-GACGGCGTACGGGC-ATTACATCTAGGCGGAGGTCGA 531 consensus_6610#1 NGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAA 526 * * ***** **** ** ** *** ****** *** * * *** ****** *** * consensus_6610#0 CGGCGGCGCA-GGCCGCGATGTGATGGAGTTCTCCTCAAGGAATCCCAGTCCCAGTCCCA 590 consensus_6610#1 CGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCA-GGACTCNCGGTGC-AGTTC-A 583 **** **** **** * ****** ** ** *** *** ** * ** * *** * * consensus_6610#0 GGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCAC 650 consensus_6610#1 TGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG---------------------- 621 ********* * * * * ** consensus_6610#0 CACTGCGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTC 710 consensus_6610#1 ------------------------------------------------------------ consensus_6610#0 GGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGAC 770 consensus_6610#1 ------------------------------------------------------------ consensus_6610#0 TATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTC 830 consensus_6610#1 ------------------------------------------------------------ consensus_6610#0 GTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTAT 890 consensus_6610#1 ------------------------------------------------------------ consensus_6610#0 TACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAA 950 consensus_6610#1 ------------------------------------------------------------ consensus_6610#0 TGCTAATTTAAAAAAAAAAAAAAAAAAAAA 980 consensus_6610#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||