cluster # 6610

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Oryza sativa
cluster # 6610 cluster # 6610 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6610#0 length = 980 sequences # 2

consensus_6610#1 length = 621 sequences # 2

consensusID : consensus_6610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 980
fasta sequence

                              [GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCGCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC-GCTCATTCGT-CCCGCTAATACAACAAACGGACAAGGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGATGAGGAGACGGCGTACGGGCATTACATCTAGGCGGAGGTCGACGGCGGCGCAGGCCGCGATGTGATGGAGTT-CTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCACCACTG-CGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTATTACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAATGCTAATTTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK067320             [GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCGCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC GCTCATTCGT CCCGCTAATACAACAAACGGACAAGGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGATGAGGAGACGGCGTACGGGCATTACATCTAGGCGGAGGTCGACGGCGGCGCAGGCCGCGATGTGATGGAGTT CTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCACCACTG CGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTATTACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAATGCTA                         ]
[+] EMBL AU101289             [                                                                                                                                                                                                                                                                                                                                                    aATGCGTGTCCNCAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCCTCCCCGGTTCA TCGTCCCCGCTAATAC ACCAACGGACAAGGCCGCCGCTTCGCTGCGCGAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAAGCCGACGAGGAGACGGCGTACGGGCACTACATCCAGGCGGAGGTCGACGGCGGCGCAGGCCGCGACGTGATGGAGTTCCTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTCATCTTCGTCTACCCCTTCACCACTGCCGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCCCCGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAATCTATTATTACTACTAAGTAGTACTAGTAGCCNCCGATATATATACNCAACAAATGTATTAATCAAAATGCTAATTTAAAAAAAAAAAAAAAAAAAAA]




>consensus_6610#0
GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGA
AGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGC
AACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGC
GGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAG
CCGCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCGAC
GCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCC
ACGGTGGGCGCATCTTGCTCCTTGGCATCCCCGCTCATTCGTCCCGCTAATACAACAAAC
GGACAAGGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAGAGGAATGCGGTGAT
CAAAGCCGATGAGGAGACGGCGTACGGGCATTACATCTAGGCGGAGGTCGACGGCGGCGC
AGGCCGCGATGTGATGGAGTTCTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTG
GCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCACCACTGCGTCG
GCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACG
CCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAACCAA
GGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCGTCCAAATTC
ATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTATTACTATTAAG
TAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAATGCTAATTTA
AAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 621
fasta sequence

                              [AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGCGGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAAGCCTGCAGCCGCCGTNCACCCNTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACCAACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGCNGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAACGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCAGGACTCNCGGTGCAGTTCATGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG]

[+] EMBL C73493               [AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGCGGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAAGCCTGCAGCCGCCGTNCACCCNTTACTCC                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA753085             [     CATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCT GGCACCAACGTGAAGAAGCC GCAGCCGCCGTCCACCCCTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACCAACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGCNGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAACGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCAGGACTCNCGGTGCAGTTCATGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG]




>consensus_6610#1
AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGTCGTAATCCTCC
TCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGCAGCAGGCGGAGGCT
TCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGCGGTCTCATCCAGAC
CCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAAGCCTGCAGCCGCCG
TNCACCCNTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCCAAAAGGAGG
ATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACCCCACGGTGGGCGCA
TCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACCAACCGGACAAAGGC
CGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGCNGGTAATCAAGCCC
GACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAACGGCNGCGCCTGGC
CCGAACGTGATGAAGCCTTCGTCAGGACTCNCGGTGCAGTTCATGAGGTGGTGCTCATAC
GATCNTACACAAGTATATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6610#0      GTTATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGA 60
consensus_6610#1      --------------AGNATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGA 46
                                    *  *******************************************

consensus_6610#0      AGTCGTAATCCTCCTCCGGCGTCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGC 120
consensus_6610#1      AGTCGTAATCCTCCTCCGGCGCCGGNGCCACACACTAGTACTNCACGAGTAGTTCGCAGC 106
                      ********************* *** **************** *****************

consensus_6610#0      AACAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGC 180
consensus_6610#1      AGCAGGCGGAGGCTTCTCTTAGTATTCNTCTCCGCAGAGGCGTCGGCGGCTGCGACGNGC 166
                      * ************************* ************** ************** **

consensus_6610#0      GGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGG-CACCAACGTGAAGAA 239
consensus_6610#1      GGTCTCATCCAGACCCCNNGTGGGCAAGCCTACCCTTTNGCTNNGCACCAACGTGAAGAA 226
                      *****************  ******************* ***   ***************

consensus_6610#0      GCC-GCAGCCGCCGTCCACCCCTTACTCTCAATCCCAATCGCAGCAGCAGTTTGGCCTCG 298
consensus_6610#1      GCCTGCAGCCGCCGTNCACCCNTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCG 286
                      *** *********** ***** ****** *******************************

consensus_6610#0      ACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACC 358
consensus_6610#1      ACGCCAAAAGGAGGATTAGGGCGTGCCCGTCGACGACCCCCGGATGCGTGTCCACAAACC 346
                      ******** *************************** ***********************

consensus_6610#0      CCACGGTGGGCGCATCTTGCTCCTTGGCATCCCC-GCTCATTCGTCCC-GCTAATACAAC 416
consensus_6610#1      CCACGGTGGGCGCATCTGGCTCCTGGGCCTCCCCCGCTCATCCTTCCCCGCTTATACACC 406
                      ***************** ****** *** ***** ****** * **** *** ***** *

consensus_6610#0      AAACGGACAA-GGCCGCCGCTTCGCTGCGCAAGGCTATCCTCAAGACGCAG-AGGAATGC 474
consensus_6610#1      AACCGGACAAAGGCCGCCGCTTCCCTGCCCAAGGCTATCCTTCAGACGCAGGAGGAATGC 466
                      ** ******* ************ **** ************  ******** ********

consensus_6610#0      GG-TGATCAAAGCCGATGAGGA-GACGGCGTACGGGC-ATTACATCTAGGCGGAGGTCGA 531
consensus_6610#1      NGGTAATCAAGCCCGACGAAGAAGACTGCGTACNGGCCACTTCATGCAGGCGGGAGTCAA 526
                       * * *****  **** ** ** *** ****** *** * * ***  ******  *** *

consensus_6610#0      CGGCGGCGCA-GGCCGCGATGTGATGGAGTTCTCCTCAAGGAATCCCAGTCCCAGTCCCA 590
consensus_6610#1      CGGCNGCGCCTGGCCCGAACGTGATGAAGCCTTCGTCA-GGACTCNCGGTGC-AGTTC-A 583
                      **** ****  ****   * ****** **   ** *** *** ** * ** * *** * *

consensus_6610#0      GGAGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTTATATTCGACTACCCCTTCAC 650
consensus_6610#1      TGAGGTGGTGCTCATACGATCNTACACAAGTATATCGG---------------------- 621
                       *********  *         * *      *    **                      

consensus_6610#0      CACTGCGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTC 710
consensus_6610#1      ------------------------------------------------------------
                                                                                  

consensus_6610#0      GGATGGTACGCCCAGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGAC 770
consensus_6610#1      ------------------------------------------------------------
                                                                                  

consensus_6610#0      TATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTC 830
consensus_6610#1      ------------------------------------------------------------
                                                                                  

consensus_6610#0      GTCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAAACTATTAT 890
consensus_6610#1      ------------------------------------------------------------
                                                                                  

consensus_6610#0      TACTATTAAGTAGTACTAGTAGCCACCGATATATATACACAACATTTGTATTAATCAAAA 950
consensus_6610#1      ------------------------------------------------------------
                                                                                  

consensus_6610#0      TGCTAATTTAAAAAAAAAAAAAAAAAAAAA 980
consensus_6610#1      ------------------------------