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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1466 fasta sequence
[CCGCAGAAGCAAAACCCAGGAGCAGCCATGGATCCCCTCGCCGTGCTCCGGGACTACGCCGCCCGCGGCGACCTCGACAAGATCATCTTCTCCGGCGACGAGGTGCTCTTCGGGTCGGAGTACACCTTCCCGGCCAACGCCCCCACCGCCTTCACCAACAAGCAGTCGGGCCGCCCCTACCCGCTCTCCGCCGCCGTCTTCCTCGCGCAGCACAACGACCTCAAGCACACCGACTTCATCCAGGCCGCCCGCCTCCGCCGCATCCCCCCCGTCTCCCTCCCCGACCGTAAGACCTTCCTCGACTTCCTCCGCCATGGCCACCACTCGCTCCCCACCGACCCATTGCTCCCCTCCGCGCTCCCGTCCTTCGCGCCGGAGCCCCAGCCGGCGATGCCCGAGGAGCCCGAGGGCGACAAGGCCTCCGGCGCCTACATCCGCGCCCTCGAGCGGACGCTCAAGGACAGGAACGCGCTCCTCGACGCCCGCGGCCGCGACTTCCTCGCCGTGCTGCAGAACGCTACGCGCCGGGAGGAGGAGCGCCGGCGGAACAAGGACAGCGCCCCCTCCTCCGCCCGCCACGAGCCCTCCTCCGCCGCCGCCGCGGCCGCCATGGCGAAGCCCAAGGTGGAGAGGTCCTTCGGGGACGGGTTCGTGCCCATCATCCTCGTGCCGAGCGCGTCGCAGACGCTGATTACGATCTACAACGTGAGGGAGTTCTTGGAGGACGGTGTGTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAGCCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGTGGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCGCGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAAGATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGTGTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAATAAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATGCGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATGTAAGCGGTCTATCTTATTTTTATTTGAAAAGAAGATCCTGAGTTCTTTGGAGTTCTGTAATGTTGGACATAATGGTTTCCTACTCCATGTTCTAGTACTGCTGCCTTCGTGTATCATGAATGGTTTACTAATCCCTATGGAGTATGGATTGACCAATCATAGATAATTTGTGATCTAATCTGAATTGCACTGTAGCTAGTGATTAGTCAGCTCTGCATATAACTGATCCTCACAAAGAACATGCATGATGTTTGTGACTGTCAAGGCTATCATGC]
[+] EMBL AK100794 [CCGCAGAAGCAAAACCCAGGAGCAGCCATGGATCCCCTCGCCGTGCTCCGGGACTACGCCGCCCGCGGCGACCTCGACAAGATCATCTTCTCCGGCGACGAGGTGCTCTTCGGGTCGGAGTACACCTTCCCGGCCAACGCCCCCACCGCCTTCACCAACAAGCAGTCGGGCCGCCCCTACCCGCTCTCCGCCGCCGTCTTCCTCGCGCAGCACAACGACCTCAAGCACACCGACTTCATCCAGGCCGCCCGCCTCCGCCGCATCCCCCCCGTCTCCCTCCCCGACCGTAAGACCTTCCTCGACTTCCTCCGCCATGGCCACCACTCGCTCCCCACCGACCCATTGCTCCCCTCCGCGCTCCCGTCCTTCGCGCCGGAGCCCCAGCCGGCGATGCCCGAGGAGCCCGAGGGCGACAAGGCCTCCGGCGCCTACATCCGCGCCCTCGAGCGGACGCTCAAGGACAGGAACGCGCTCCTCGACGCCCGCGGCCGCGACTTCCTCGCCGTGCTGCAGAACGCTACGCGCCGGGAGGAGGAGCGCCGGCGGAACAAGGACAGCGCCCCCTCCTCCGCCCGCCACGAGCCCTCCTCCGCCGCCGCCGCGGCCGCCATGGCGAAGCCCAAGGTGGAGAGGTCCTTCGGGGACGGGTTCGTGCCCATCATCCTCGTGCCGAGCGCGTCGCAGACGCTGATTACGATCTACAACGTGAGGGAGTTCTTGGAGGACGGTGTGTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAGCCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGTGGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCGCGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAAGATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGTGTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAATAAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATGCGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATGTAAGCGGTCTATCTTATTTTTATTTGAAAAGAAGATCCTGAGTTCTTTGGAGTTCTGTAATGTTGGACATAATGGTTTCCTACTCCATGTTCTAGTACTGCTGCCTTCGTGTATCATGAATGGTTTACTAATCCCTATGGAGTATGGATTGACCAATCATAGATAATTTGTGATCTAATCTGAATTGCACTGTAGCTAGTGATTAGTCAGCTCTGCATATAACTGATCCTCACAAAGAACATGCATGATGTTTGTGACTGTCAAGGCTATCATGC]
[+] EMBL CB673661 [ AGGAGCACCCTTGGATCCCCTCGCCGTGCTCCGGGACTACGCCGCCCGCGGCGACCTCGACAAGATCATCTTCTCCGGCGACGAGGTGCTCTTCGGGTCGGAGTACACCTTCCCGGCCAACGCCCCCACCGCCTTCACCAACAAGCAGTCGGGCCGCCCCTACCCGCTCTCCGCCGCCGTCTTCCTCGCGCAGCACAACGACCTCAAGCACACCGACTTCATCCAGGCCGCCCGCCTCCGCCGCATCCCCCCCGTCTCCCTCCCCGACCGTAAGACCTTCCTCGACTTCCTCCGCCATGGCCACCACTCGCTCCCCACCGACCCATTGCTCCCCTCCGCGCTCCCGTCCTTCGCGCCGGAGCCCCAGCCGGCGATGCCCGAGGAGCCCGAGGGCGACAAGGCCTCCGGCGCCTACATCCGCGCCCTCGAGCGGACGCTCAAGGACAGGAACGCGCTCCTCGACGCCCGCGGCCGCGACTTCCTCGCCGTGCTGCAGAACGCCACGCGCCGGGAGGAGGAGCGCCGGCGGAACAAGGACAGCGCCCCCTCCTCCGCCCGCCACGAGCCCTCCTCCGCCGCCGCCGCGGCCGCCATGGCGAAGCCCAAGGTGGAGAGGTCCTTCGGGGACGGGTTCGTGCCCATCATCCTCGTGCCGAGCGCGTCGCAGACGCTGATTACGATCTACAACGTGAGGGAGTTCTTGGAGGACGGTGTGTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAGCCCG ]
consensusID : consensus_6611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[GTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAGCCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGTGGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCGCGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAAGATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGTGTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAATAAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATGCGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATATAAGTTTCACGCTGAGCGATAGAAGTGGATGCTATTCTGGGTGAATTATTGACAGGTGGAACAGCCATCCTTGATCTTTGTTTCTTTAGTGACCTTAGATATGTTCAAATGCGATGGCAGGCAGGAACCTCCTTGCCTACACCCATGAGCATGTGTAACCTGTGTACAATCAGTCGCTGAGCTATGGCGCATGGGCATGTTTAATTGCAGATTGCTGACATGTGCCTTGTTGACGCACGCATTTGTCGTGCACTTGTCATATTTTAAGCAAGTACATGAACATAGCAAATGTATGCTAAACATAGTCCAGAGGTATGAAATGGACTATTTAGAGTTTCAAC]
[-] EMBL CB673662 [GTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAGCCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGTGGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCGCGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAAGATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGTGTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAATAAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATGCGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATATAAGTTTCACGCTGAGCGATAGAAGTGGATGCTATTCTGGGTGAATTATTGACAGGTGGAACAGCCATCCTTGATCTTTGTTTCTTTAGTGACCTTAGATATGTTCAAATGCGATGGCAGGCAGGAACCTCCTTGCCTACACCCATGAGCATGTGTAACCTGTGTACAATCAGTCGCTGAGCTATGGCGCATGGGCATGTTTAATTGCAGATTGCTGACATGTGCCTTGTTGACGCACGCATTTGTCGTGCACTTGTCATATTTTAAGCAAGTACATGAACATAGCAAATGTATGCTAAACATAGTCCAGAGGTATGAAATGGACTATTTAGAGTTTCAAC]
[+] EMBL CA767448 [ CAAAGACTGGCCATTCAAAGATCCTGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGTGTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAATAAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATGCGGGCACACGCATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATATAAGTTTCACGCTGAGCGATAGAAGTGGATGCTATTCTGGGTGAATTATTGACAGGTGGAACAGCCATCCTTGATCTTTGTTTCCTTAGTGACCTTAGATATGTTCAAATGCGATGGCGGGCAGGAACCTCCTTGCCTACACCCATGAGCATGTGTAACCTGTGTACAATCAGTCGCTGAGCTATGGCGCATGGGCATGTTTAATTGCAGATTGCTGACATGTGCCTTGTTGACGCACGCATTTGTCGTGCACTTGTCATATTTTAAGCAAGTACATGAACATAGCAAATGTATGCTAAACATAGTCCAGAGGTATGAAATGGACTATTTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6611#0 CCGCAGAAGCAAAACCCAGGAGCAGCCATGGATCCCCTCGCCGTGCTCCGGGACTACGCC 60
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GCCCGCGGCGACCTCGACAAGATCATCTTCTCCGGCGACGAGGTGCTCTTCGGGTCGGAG 120
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 TACACCTTCCCGGCCAACGCCCCCACCGCCTTCACCAACAAGCAGTCGGGCCGCCCCTAC 180
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CCGCTCTCCGCCGCCGTCTTCCTCGCGCAGCACAACGACCTCAAGCACACCGACTTCATC 240
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CAGGCCGCCCGCCTCCGCCGCATCCCCCCCGTCTCCCTCCCCGACCGTAAGACCTTCCTC 300
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GACTTCCTCCGCCATGGCCACCACTCGCTCCCCACCGACCCATTGCTCCCCTCCGCGCTC 360
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CCGTCCTTCGCGCCGGAGCCCCAGCCGGCGATGCCCGAGGAGCCCGAGGGCGACAAGGCC 420
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 TCCGGCGCCTACATCCGCGCCCTCGAGCGGACGCTCAAGGACAGGAACGCGCTCCTCGAC 480
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GCCCGCGGCCGCGACTTCCTCGCCGTGCTGCAGAACGCTACGCGCCGGGAGGAGGAGCGC 540
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 CGGCGGAACAAGGACAGCGCCCCCTCCTCCGCCCGCCACGAGCCCTCCTCCGCCGCCGCC 600
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GCGGCCGCCATGGCGAAGCCCAAGGTGGAGAGGTCCTTCGGGGACGGGTTCGTGCCCATC 660
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 ATCCTCGTGCCGAGCGCGTCGCAGACGCTGATTACGATCTACAACGTGAGGGAGTTCTTG 720
consensus_6611#1 ------------------------------------------------------------
consensus_6611#0 GAGGACGGTGTGTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAG 780
consensus_6611#1 -----------GTTCGTGCCGAGCGACGAGAGGATGCGCGCGATGAAGGGGAGCGGGAAG 49
*************************************************
consensus_6611#0 CCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGT 840
consensus_6611#1 CCCGAGTGCGTCATGGTGCAGAAGAAGCTGATTCGTGGGGAGAGGGCCGGTGCTGGTGGT 109
************************************************************
consensus_6611#0 GGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCG 900
consensus_6611#1 GGCGCGACAACGTTCGAGGTGAGGGACAAGCCGGCTTCGCTTAAGGCAGACGATTGGGCG 169
************************************************************
consensus_6611#0 CGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAA 960
consensus_6611#1 CGGGTGGTGGCCGTGTTTGTGCTCGGCAAGGAGTGGCAGTTCAAAGACTGGCCATTCAAA 229
************************************************************
consensus_6611#0 GATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGT 1020
consensus_6611#1 GATCATGTTGAGATCTTCAATAAGGTTATTGGTTTCTATGTGCGCTTTGAAGATGATAGT 289
************************************************************
consensus_6611#0 GTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAAT 1080
consensus_6611#1 GTGGAGGCAGCCAAAGTGGTCAAACAGTGGAATGTTAAAATCATATCTATAAGCAAGAAT 349
************************************************************
consensus_6611#0 AAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATG 1140
consensus_6611#1 AAAAGGCATCAAGACAGAACAGCAGCCCTTGAGGTATGGGAGCGGCTAGAGGAATTTATG 409
************************************************************
consensus_6611#0 CGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATGTAAGC---- 1196
consensus_6611#1 CGGGCACACACATAGTTGAAGTATCATGTACACCAGAACGGCAGGATCATATAAGTTTCA 469
************************************************** ****
consensus_6611#0 --------------GGTCTATCTTATTTT--------TATT------TGAAAAGAAGATC 1228
consensus_6611#1 CGCTGAGCGATAGAAGTGGATGCTATTCTGGGTGAATTATTGACAGGTGGAACAGCCATC 529
** ** **** * **** ** ** ***
consensus_6611#0 CTGAGTTCTTTGGAGTTCTGTAATGTTGGACATAATGGTTTCCTACTCCATGTTCTAGTA 1288
consensus_6611#1 CTTGATCTTTGTTTCTTTAGTGACCTTAGATATGTTCAAATGCGATGGCAGGCAGGAACC 589
** * ** ** ** * ** ** ** * * * * ** * *
consensus_6611#0 CTGCTGCCTTCGTGTAT---CATGAATGGTTTAC---TAATCC---------CTATGGAG 1333
consensus_6611#1 TCCTTGCCTACACCCATGAGCATGTGTAACCTGTGTACAATCAGTCGCTGAGCTATGGCG 649
***** * ** **** * * **** ****** *
consensus_6611#0 TATGGAT-TGACCAATCATAGATAATT--TGTGATCTAATCTGAATTGCACTGTAGCTAG 1390
consensus_6611#1 CATGGGCATGTTTAATTGCAGATTGCTGACATGTGCCTTGTTGACGCACGCATTTGTCGT 709
**** ** *** **** * ** * *** * * * *
consensus_6611#0 TGATTAGTCAGCTCT---GCATATAACTGATCCTCACAAA-GAACATGCATGAT-GTTTG 1445
consensus_6611#1 GCACTTGTCATATTTTAAGCAAGTACATGAACATAGCAAATGTATGCTAAACATAGTCCA 769
* * **** * * *** ** *** * * **** * * * ** **
consensus_6611#0 TGACTGTCAAGGCTATCATGC----------- 1466
consensus_6611#1 GAGGTATGAAATGGACTATTTAGAGTTTCAAC 801
* * ** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||