These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence [AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCCAGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTGTCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGACGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGTTCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCAAAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTCTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTTTAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTGAGAATTAGAGAAAGAAAAAAA] [+] EMBL AK060544 [AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCCAGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTGTCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGACGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGTTCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCAAAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTCTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTTTAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTG ] [+] EMBL OSR29861A [ CTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGCACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCG ] [+] EMBL AU173416 [ TGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTNTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTNTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATNAAAATGTATATGTTGGCATGCCTCATNAATTGAATGTTTGTTNAGAATTAGAGAAAGAAAAAAA] consensusID : consensus_6612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTGTGGTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTTTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760339 [NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTGTGGTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTTTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6612#0 AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCC 60 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 AGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCT 120 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 CCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACT 180 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 ACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAA 240 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 ATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGT 300 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 ACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTG 360 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 TCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGA 420 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 CGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGT 480 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 TCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCA 540 consensus_6612#1 ------------------------------------------------------------ consensus_6612#0 AAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGC 600 consensus_6612#1 ---NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGC 57 ******* ********* ********* **** ********************* consensus_6612#0 AGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATG 660 consensus_6612#1 AGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATG 117 ************************************************************ consensus_6612#0 GCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTT 720 consensus_6612#1 GCTTTAATTTTTT-GTGGT-GGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTT 175 ************* ***** **************************************** consensus_6612#0 CTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTT 780 consensus_6612#1 TTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTT 235 *********************************************************** consensus_6612#0 GGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTT 840 consensus_6612#1 GGACGGCAATCAGATTTAGGTCAGACAACCCAGGT------------------------- 270 *********************************** consensus_6612#0 TAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGT 900 consensus_6612#1 ----------------------------------------------------------GT 272 ** consensus_6612#0 TTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGT 960 consensus_6612#1 TTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGT 332 **************************************************** ******* consensus_6612#0 GGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCA 1020 consensus_6612#1 GGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCA 392 *************************************** ************ ******* consensus_6612#0 GTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGT 1080 consensus_6612#1 GTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGT 452 ************************************************************ consensus_6612#0 AATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTAC 1140 consensus_6612#1 AATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTAC 512 *************************** *************** **************** consensus_6612#0 TTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGA 1200 consensus_6612#1 TTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGA 572 ************************ *********************************** consensus_6612#0 TAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCT 1260 consensus_6612#1 TAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCT 632 ************************************************************ consensus_6612#0 TTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTGAGAA 1320 consensus_6612#1 TTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAA--------------AAAA 678 ************************************** ** * ** consensus_6612#0 TTAGAGAAAGAAAAAAA 1337 consensus_6612#1 AAAAAAAAAAAAAA--- 692 * * *** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||